IBBR Publications

Found 2943 results
Lin F-Y, Mackerell AD. Improved Modeling of Cation-π and Anion-Ring Interactions Using the Drude Polarizable Empirical Force Field for Proteins. J Comput Chem. 2019 .
Hudgens JW, Gallagher ES, Karageorgos I, Anderson KW, Filliben JJ, Huang RY-C, Chen G, Bou-Assaf GM, Espada A, Chalmers MJ, et al. Interlaboratory Comparison of Hydrogen-Deuterium Exchange Mass Spectrometry Measurements of the Fab Fragment of NISTmAb. Anal Chem. 2019 .
Molina-Crespo A, Cadete A, Sarrio D, Gamez-Chiachio M, Martinez L, Chao K, Olivera A, Gonella A, Diaz E, Palacios J, et al. Intracellular delivery of an antibody targeting Gasdermin-B reduces HER2 breast cancer aggressiveness. Clin Cancer Res. 2019 .
Mackerell AD. Ions Everywhere? Mg in the μ-Opioid GPCR and Atomic Details of Their Impact on Function. Biophys J. 2019 .
Yang H, Luo D, Etobayeva I, Li X, Gong Y, Wang S, Li Q, Xu P, Yin W, He J, et al. Linker editing of pneumococcal lysin ClyJ conveys improved bactericidal activity. Antimicrob Agents Chemother. 2019 .
Wang T, Nguyen A, Zhang L, Turko IV. Mass spectrometry enumeration of filamentous M13 bacteriophage. Anal Biochem. 2019 ;582:113354.
Pal LR, Kundu K, Yin Y, Moult J. Matching whole genomes to rare genetic disorders: Identification of potential causative variants using phenotype-weighted knowledge in the CAGI SickKids5 clinical genomes challenge. Hum Mutat. 2019 .
Bergonzo C, Grishaev A. Maximizing accuracy of RNA structure in refinement against residual dipolar couplings. J Biomol NMR. 2019 .
An J, Zeng T, Ji C, de Graaf S, Zheng Z, Xiao TTing, Deng X, Xiao S, Bisseling T, Limpens E, et al. A Medicago truncatula SWEET transporter implicated in arbuscule maintenance during arbuscular mycorrhizal symbiosis. New Phytol. 2019 .
Bedrov D, Piquemal J-P, Borodin O, Mackerell AD, Roux B, Schröder C. Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields. Chem Rev. 2019 .
Zheng X, Zhu K, Sun Q, Zhang W, Wang X, Cao H, Tan M, Xie Z, Zeng Y, Ye J, et al. Natural Variation in CCD4 Promoter Underpins Species-Specific Evolution of Red Coloration in Citrus Peel. Mol Plant. 2019 .
Chowdhury IRoy, Yeddula SGoutham Re, Pierce BG, Samal SK, Kim S-H. Newcastle disease virus vectors expressing consensus sequence of the H7 HA protein protect broiler chickens and turkeys against highly pathogenic H7N8 virus. Vaccine. 2019 ;37(35):4956-4962.
Briggs KT, Taraban MB, Wang W, Y Yu B. Nondestructive Quantitative Inspection of Drug Products Using Benchtop NMR Relaxometry-the Case of NovoMix® 30. AAPS PharmSciTech. 2019 ;20(5):189.
Ramalingam S, Ramamurthy VP, Gediya LK, Murigi FN, Purushottamachar P, Huang W, Choi EYong, Zhang Y, Vasaitis TS, Kane MA, et al. The Novel Mnk1/2 Degrader and Apoptosis Inducer VNLG-152 Potently Inhibits TNBC Tumor Growth and Metastasis. Cancers (Basel). 2019 ;11(3).
Ustach VD, Lakkaraju SKaushik, Jo S, Yu W, Jiang W, Mackerell AD. Optimization and Evaluation of Site-Identification by Ligand Competitive Saturation (SILCS) as a Tool for Target-Based Ligand Optimization. J Chem Inf Model. 2019 .
Austin JW, Buckner CM, Kardava L, Wang W, Zhang X, Melson VA, Swanson RG, Martins AJ, Zhou JQ, Hoehn KB, et al. Overexpression of T-bet in HIV infection is associated with accumulation of B cells outside germinal centers and poor affinity maturation. Sci Transl Med. 2019 ;11(520).
Monzon AMiguel, Carraro M, Chiricosta L, Reggiani F, Han J, Ozturk K, Wang Y, Miller M, Bromberg Y, Capriotti E, et al. Performance of computational methods for the evaluation of Pericentriolar Material 1 missense variants in CAGI-5. Hum Mutat. 2019 .
Virgile C, Hauk P, Wu H-C, Bentley WE. Plasmid-encoded protein attenuates E. coli swimming velocity and cell growth, not reprogrammed regulatory functions. Biotechnol Prog. 2019 :e2778.
Brannan JM, He S, Howell KA, Prugar LI, Zhu W, Vu H, Shulenin S, Kailasan S, Raina H, Wong G, et al. Post-exposure immunotherapy for two ebolaviruses and Marburg virus in nonhuman primates. Nat Commun. 2019 ;10(1):105.
Edison AS, Le Guennec A, Delaglio F, Kupče Ē. Practical Guidelines for C-Based NMR Metabolomics. Methods Mol Biol. 2019 ;2037:69-95.
McInnes G, Daneshjou R, Katsonis P, Lichtarge O, Srinivasan RG, Rana S, Radivojac P, Mooney SD, Pagel KA, Stamboulian M, et al. Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Hum Mutat. 2019 .
Kim E, Kang M, Liu H, Cao C, Liu C, Bentley WE, Qu X, Payne GF. Pro- and Anti-oxidant Properties of Redox-Active Catechol-Chitosan Films. Front Chem. 2019 ;7:541.
Coven SL, Bibart M, Frost R, D Gallagher T, Guinipero T, Valasek AE, Olshefski R. A Quality Improvement Approach to Increase Exercise Assessment in Survivors of Childhood Leukemia. Pediatr Qual Saf. 2019 ;4(4):e198.
Gargava A, Ahn S, Bentley WE, Raghavan SR. Rapid Electroformation of Biopolymer Gels in Prescribed Shapes and Patterns: A Simpler Alternative to 3-D Printing. ACS Appl Mater Interfaces. 2019 ;11(40):37103-37111.
Kim E, Panzella L, Napolitano A, Payne GF. Redox Activities of Melanins Investigated by Electrochemical Reverse Engineering: Implications for their Roles in Oxidative Stress. J Invest Dermatol. 2019 .