IBBR Publications

Found 365 results
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Moult J, Fidelis K, Rost B, Hubbard T, Tramontano A. Critical assessment of methods of protein structure prediction (CASP)--round 6. Proteins. 2005 ;61 Suppl 7:3-7.
Teplyakov A, Liu S, Lu Z, Howard A, Dunaway-Mariano D, Herzberg O. Crystal structure of the petal death protein from carnation flower. Biochemistry. 2005 ;44(50):16377-84.
Liu S, Lu Z, Han Y, Melamud E, Dunaway-Mariano D, Herzberg O. Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution. Biochemistry. 2005 ;44(8):2949-62.
Galkin A, Lu X, Dunaway-Mariano D, Herzberg O. Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase. J Biol Chem. 2005 ;280(40):34080-7.
Abdulaev NG, Ngo T, Zhang C, Dinh A, Brabazon DM, Ridge KD, Marino JP. Heterotrimeric G-protein alpha-subunit adopts a "preactivated" conformation when associated with betagamma-subunits. J Biol Chem. 2005 ;280(45):38071-80.
Macias AT, Mia MYounus, Xia G, Hayashi J, Mackerell AD. Lead validation and SAR development via chemical similarity searching; application to compounds targeting the pY+3 site of the SH2 domain of p56lck. J Chem Inf Model. 2005 ;45(6):1759-66.
Yue P, Li Z, Moult J. Loss of protein structure stability as a major causative factor in monogenic disease. J Mol Biol. 2005 ;353(2):459-73.
Li Y, Huang Y, Swaminathan CP, Smith-Gill SJ, Mariuzza RA. Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces. Structure. 2005 ;13(2):297-307.
Pierce BG, Tong W, Weng Z. M-ZDOCK: a grid-based approach for Cn symmetric multimer docking. Bioinformatics. 2005 ;21(8):1472-8.
Yeh DCheon, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J. NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog. Protein Sci. 2005 ;14(2):424-30.
Kryshtafovych A, Venclovas C, Fidelis K, Moult J. Progress over the first decade of CASP experiments. Proteins. 2005 ;61 Suppl 7:225-36.
Yan Y, Moult J. Protein family clustering for structural genomics. J Mol Biol. 2005 ;353(3):744-59.
Mintseris J, Wiehe K, Pierce BG, Anderson R, Chen R, Janin J, Weng Z. Protein-Protein Docking Benchmark 2.0: an update. Proteins. 2005 ;60(2):214-6.
Grishaev A, Wu J, Trewhella J, Bax A. Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data. J Am Chem Soc. 2005 ;127(47):16621-8.
Wilder PT, Varney KM, Weiss MB, Gitti RK, Weber DJ. Solution structure of zinc- and calcium-bound rat S100B as determined by nuclear magnetic resonance spectroscopy. Biochemistry. 2005 ;44(15):5690-702.
Huang N, Mackerell AD. Specificity in protein-DNA interactions: energetic recognition by the (cytosine-C5)-methyltransferase from HhaI. J Mol Biol. 2005 ;345(2):265-74.
Cho S, Swaminathan CP, Yang J, Kerzic MC, Guan R, Kieke MC, Kranz DM, Mariuzza RA, Sundberg EJ. Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction. Structure. 2005 ;13(12):1775-87.
Chen Y-J, Yu X, Kasiviswanathan R, Shin J-H, Kelman Z, Egelman EH. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. J Mol Biol. 2005 ;346(2):389-94.
Li Y, Huang Y, Lue J, Quandt JA, Martin R, Mariuzza RA. Structure of a human autoimmune TCR bound to a myelin basic protein self-peptide and a multiple sclerosis-associated MHC class II molecule. EMBO J. 2005 ;24(17):2968-79.