IBBR Publications

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Schiel JE, Lowenthal MS, Phinney KW. Mass spectrometry characterization for chemoenzymatic glycoprotein synthesis. J Mass Spectrom. 2011 ;46(7):649-57.
Dykstra PH, Roy V, Byrd C, Bentley WE, Ghodssi R. Microfluidic electrochemical sensor array for characterizing protein interactions with various functionalized surfaces. Anal Chem. 2011 ;83(15):5920-7.
Calderon AJ, Bhowmick T, Leferovich J, Burman B, Pichette B, Muzykantov V, Eckmann DM, Muro S. Optimizing endothelial targeting by modulating the antibody density and particle concentration of anti-ICAM coated carriers. J Control Release. 2011 ;150(1):37-44.
Arensburger P, Hice RH, Zhou L, Smith RC, Tom AC, Wright JA, Knapp J, O'Brochta DA, Craig NL, Atkinson PW. Phylogenetic and functional characterization of the hAT transposon superfamily. Genetics. 2011 ;188(1):45-57.
O'Brochta DA, Alford RT, Pilitt KL, Aluvihare CU, Harrell RA. piggyBac transposon remobilization and enhancer detection in Anopheles mosquitoes. Proc Natl Acad Sci U S A. 2011 ;108(39):16339-44.
Yap JL, Worlikar S, Mackerell AD, Shapiro P, Fletcher S. Small-molecule inhibitors of the ERK signaling pathway: Towards novel anticancer therapeutics. ChemMedChem. 2011 ;6(1):38-48.
Regier JC, Zwick A. Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods. PLoS One. 2011 ;6(8):e23408.
Bruno RD, Vasaitis TS, Gediya LK, Purushottamachar P, Godbole AM, Ates-Alagoz Z, Brodie AMH, Njar VCO. Synthesis and biological evaluations of putative metabolically stable analogs of VN/124-1 (TOK-001): head to head anti-tumor efficacy evaluation of VN/124-1 (TOK-001) and abiraterone in LAPC-4 human prostate cancer xenograft model. Steroids. 2011 ;76(12):1268-79.
Kryshtafovych A, Moult J, Bartual SG, J Bazan F, Berman H, Casteel DE, Christodoulou E, Everett JK, Hausmann J, Heidebrecht T, et al. Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins. 2011 ;79 Suppl 10:6-20.
Regier JC, Shultz JW, Zwick A, Hussey A, Ball B, Wetzer R, Martin JW, Cunningham CW. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences. Nature. 2010 ;463(7284):1079-83.
Cho S, Swaminathan CP, Bonsor DA, Kerzic MC, Guan R, Yang J, Kieke MC, Andersen PS, Kranz DM, Mariuzza RA, et al. Assessing energetic contributions to binding from a disordered region in a protein-protein interaction . Biochemistry. 2010 ;49(43):9256-68.
Gilquin B, Cannon BR, Hubstenberger A, Moulouel B, Falk E, Merle N, Assard N, Kieffer S, Rousseau D, Wilder PT, et al. The calcium-dependent interaction between S100B and the mitochondrial AAA ATPase ATAD3A and the role of this complex in the cytoplasmic processing of ATAD3A. Mol Cell Biol. 2010 ;30(11):2724-36.
Ballin JD, Prevas JP, Ross CR, Toth EA, Wilson GM, M Record T. Contributions of the histidine side chain and the N-terminal alpha-amino group to the binding thermodynamics of oligopeptides to nucleic acids as a function of pH. Biochemistry. 2010 ;49(9):2018-30.
Zhang J, Wang Y, Li S. Deuterium isobaric amine-reactive tags for quantitative proteomics. Anal Chem. 2010 ;82(18):7588-95.
Charpentier TH, Thompson LE, Liriano MA, Varney KM, Wilder PT, Pozharski E, Toth EA, Weber DJ. The effects of CapZ peptide (TRTK-12) binding to S100B-Ca2+ as examined by NMR and X-ray crystallography. J Mol Biol. 2010 ;396(5):1227-43.
Ofek GA, F Guenaga J, Schief WR, Skinner J, Baker D, Wyatt R, Kwong PD. Elicitation of structure-specific antibodies by epitope scaffolds. Proc Natl Acad Sci U S A. 2010 ;107(42):17880-7.
Douagi I, Forsell MNE, Sundling C, O'Dell S, Feng Y, Dosenovic P, Li Y, Seder R, Loré K, Mascola JR, et al. Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates. J Virol. 2010 ;84(4):1683-95.
Muro S. New biotechnological and nanomedicine strategies for treatment of lysosomal storage disorders. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2010 ;2(2):189-204.
Liao W-L, Heo G-Y, Dodder NG, Pikuleva IA, Turko IV. Optimizing the conditions of a multiple reaction monitoring assay for membrane proteins: quantification of cytochrome P450 11A1 and adrenodoxin reductase in bovine adrenal cortex and retina. Anal Chem. 2010 ;82(13):5760-7.
Hwang H, Vreven T, Pierce BG, Hung J-H, Weng Z. Performance of ZDOCK and ZRANK in CAPRI rounds 13-19. Proteins. 2010 ;78(15):3104-10.
Ryan CM, Souda P, Bassilian S, Ujwal R, Zhang J, Abramson J, Ping P, Durazo A, Bowie JU, S Hasan S, et al. Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation. Mol Cell Proteomics. 2010 ;9(5):791-803.
Marin A, Decollibus DP, Andrianov AK. Protein stabilization in aqueous solutions of polyphosphazene polyelectrolyte and non-ionic surfactants. Biomacromolecules. 2010 ;11(9):2268-73.
Bryan PN, Orban J. Proteins that switch folds. Curr Opin Struct Biol. 2010 ;20(4):482-8.
Roltsch E, Holcomb L, Young KA, Marks A, Zimmer DB. PSAPP mice exhibit regionally selective reductions in gliosis and plaque deposition in response to S100B ablation. J Neuroinflammation. 2010 ;7:78.
Prosser BL, Hernández-Ochoa EO, Lovering RM, Andronache Z, Zimmer DB, Melzer W, Schneider MF. S100A1 promotes action potential-initiated calcium release flux and force production in skeletal muscle. Am J Physiol Cell Physiol. 2010 ;299(5):C891-902.