IBBR Publications

Found 365 results
Filters: Keyword is Protein Conformation  [Clear All Filters]
2008
Ramprakash J, Doseeva V, Galkin A, Krajewski W, Muthukumar L, Pullalarevu S, Demirkan E, Herzberg O, Moult J, Schwarz FP. Comparison of the chemical and thermal denaturation of proteins by a two-state transition model. Anal Biochem. 2008 ;374(1):221-30.
Sun Y, Makarava N, Lee C-I, Laksanalamai P, Robb FT, Baskakov IV. Conformational stability of PrP amyloid fibrils controls their smallest possible fragment size. J Mol Biol. 2008 ;376(4):1155-67.
Xu Y, Colletier J-P, Weik M, Jiang H, Moult J, Silman I, Sussman JL. Flexibility of aromatic residues in the active-site gorge of acetylcholinesterase: X-ray versus molecular dynamics. Biophys J. 2008 ;95(5):2500-11.
Gawrisch K, Soubias O, Mihailescu M. Insights from biophysical studies on the role of polyunsaturated fatty acids for function of G-protein coupled membrane receptors. Prostaglandins Leukot Essent Fatty Acids. 2008 ;79(3-5):131-4.
Struble EB, Ladner JE, Brabazon DM. New crystal structures of ColE1 Rom and variants resulting from mutation of a surface exposed residue: Implications for RNA-recognition. Proteins. 2008 ;72(2):761-8.
Pancer Z, Mariuzza RA. The oldest antibodies newly discovered. Nat Biotechnol. 2008 ;26(4):402-3.
Wiehe K, Peterson MW, Pierce BG, Mintseris J, Weng Z. Protein-protein docking: overview and performance analysis. Methods Mol Biol. 2008 ;413:283-314.
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome Biol. 2008 ;9(8):R121.
Valincius G, Heinrich F, Budvytyte R, Vanderah DJ, McGillivray DJ, Sokolov Y, Hall JE, Lösche M. Soluble amyloid beta-oligomers affect dielectric membrane properties by bilayer insertion and domain formation: implications for cell toxicity. Biophys J. 2008 ;95(10):4845-61.
Baniulis D, Yamashita E, Zhang H, S Hasan S, Cramer WA. Structure-function of the cytochrome b6f complex. Photochem Photobiol. 2008 ;84(6):1349-58.
2007
Thompson LC, Ladner JE, Codreanu SG, Harp J, Gilliland GL, Armstrong RN. 2-Hydroxychromene-2-carboxylic acid isomerase: a kappa class glutathione transferase from Pseudomonas putida. Biochemistry. 2007 ;46(23):6710-22.
Dey B, Pancera M, Svehla K, Shu Y, Xiang S-H, Vainshtein J, Li Y, Sodroski J, Kwong PD, Mascola JR, et al. Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: antigenicity, biophysics, and immunogenicity. J Virol. 2007 ;81(11):5579-93.
Zhong S, Macias AT, Mackerell AD. Computational identification of inhibitors of protein-protein interactions. Curr Top Med Chem. 2007 ;7(1):63-82.
Moult J, Fidelis K, Kryshtafovych A, Rost B, Hubbard T, Tramontano A. Critical assessment of methods of protein structure prediction-Round VII. Proteins. 2007 ;69 Suppl 8:3-9.
Mintseris J, Pierce BG, Wiehe K, Anderson R, Chen R, Weng Z. Integrating statistical pair potentials into protein complex prediction. Proteins. 2007 ;69(3):511-20.
Wiehe K, Pierce BG, Tong WWei, Hwang H, Mintseris J, Weng Z. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins. 2007 ;69(4):719-25.
Parsons JF, Greenhagen BT, Shi K, Calabrese K, Robinson H, Ladner JE. Structural and functional analysis of the pyocyanin biosynthetic protein PhzM from Pseudomonas aeruginosa. Biochemistry. 2007 ;46(7):1821-8.
Deng L, Langley RJ, Brown PH, Xu G, Teng L, Wang Q, Gonzales MI, Callender GG, Nishimura MI, Topalian SL, et al. Structural basis for the recognition of mutant self by a tumor-specific, MHC class II-restricted T cell receptor. Nat Immunol. 2007 ;8(4):398-408.
Chao KL, Muthukumar L, Herzberg O. Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis. Biochemistry. 2007 ;46(23):6911-20.
Jiang Z-X, Y Yu B. The synthesis of a geminally perfluoro-tert-butylated beta-amino acid and its protected forms as a potential pharmacokinetic modulator and reporter for peptide-based pharmaceuticals. J Org Chem. 2007 ;72(4):1464-7.
Sundberg EJ, Deng L, Mariuzza RA. TCR recognition of peptide/MHC class II complexes and superantigens. Semin Immunol. 2007 ;19(4):262-71.
Guvench O, Qu C-K, Mackerell AD. Tyr66 acts as a conformational switch in the closed-to-open transition of the SHP-2 N-SH2-domain phosphotyrosine-peptide binding cleft. BMC Struct Biol. 2007 ;7:14.