IBBR Publications

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Regier JC, Brown JW, Mitter C, Baixeras J, Cho S, Cummings MP, Zwick A. A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution. PLoS One. 2012 ;7(4):e35574.
Godbole AM, Purushottamachar P, Martin MS, Njar VCO. Murine toxicology and pharmacokinetics evaluation of retinoic acid metabolism blocking agent (RAMBA), VN/12-1. Cancer Chemother Pharmacol. 2012 ;70(2):339-44.
González PM, Hussainzada N, Swaan PW, Mackerell AD, Polli JE. Putative irreversible inhibitors of the human sodium-dependent bile acid transporter (hASBT; SLC10A2) support the role of transmembrane domain 7 in substrate binding/translocation. Pharm Res. 2012 ;29(7):1821-31.
Kurouski D, Luo H, Sereda V, Robb FT, Lednev IK. Rapid degradation kinetics of amyloid fibrils under mild conditions by an archaeal chaperonin. Biochem Biophys Res Commun. 2012 ;422(1):97-102.
Zhang J, Shen Y, May SL, Nelson DC, Li S. Ratiometric fluorescence detection of pathogenic bacteria resistant to broad-spectrum β-lactam antibiotics. Angew Chem Int Ed Engl. 2012 ;51(8):1865-8.
Zwick A, Regier JC, Zwickl DJ. Resolving discrepancy between nucleotides and amino acids in deep-level arthropod phylogenomics: differentiating serine codons in 21-amino-acid models. PLoS One. 2012 ;7(11):e47450.
Yin Y, Li Y, Mariuzza RA. Structural basis for self-recognition by autoimmune T-cell receptors. Immunol Rev. 2012 ;250(1):32-48.
Yuan W, Anderson KW, Li S, Edwards JL. Subsecond absolute quantitation of amine metabolites using isobaric tags for discovery of pathway activation in mammalian cells. Anal Chem. 2012 ;84(6):2892-9.
Sacha JB, Kim I-J, Chen L, Ullah JH, Goodwin DA, Simmons HA, Schenkman DI, von Pelchrzim F, Gifford RJ, Nimityongskul FA, et al. Vaccination with cancer- and HIV infection-associated endogenous retrotransposable elements is safe and immunogenic. J Immunol. 2012 ;189(3):1467-79.
Wang XXiang, Li Y, Yin Y, Mo M, Wang Q, Gao W, Wang L, Mariuzza RA. Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex. Proc Natl Acad Sci U S A. 2011 ;108(38):15960-5.
Cheng Y, Luo X, Tsao C-Y, Wu H-C, Betz J, Payne GF, Bentley WE, Rubloff GW. Biocompatible multi-address 3D cell assembly in microfluidic devices using spatially programmable gel formation. Lab Chip. 2011 ;11(14):2316-8.
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S, et al. Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?. Syst Biol. 2011 ;60(6):782-96.
Zeng Y, He Y, Yang F, Mooney SM, Getzenberg RH, Orban J, Kulkarni P. The cancer/testis antigen prostate-associated gene 4 (PAGE4) is a highly intrinsically disordered protein. J Biol Chem. 2011 ;286(16):13985-94.
Heo G-Y, Bederman I, Mast N, Liao W-L, Turko IV, Pikuleva IA. Conversion of 7-ketocholesterol to oxysterol metabolites by recombinant CYP27A1 and retinal pigment epithelial cells. J Lipid Res. 2011 ;52(6):1117-27.
Wang Y, Liu Y, Cheng Y, Kim E, Rubloff GW, Bentley WE, Payne GF. Coupling electrodeposition with layer-by-layer assembly to address proteins within microfluidic channels. Adv Mater. 2011 ;23(48):5817-21.
Fernández MM, Cho S, De Marzi MC, Kerzic MC, Robinson H, Mariuzza RA, Malchiodi EL. Crystal structure of staphylococcal enterotoxin G (SEG) in complex with a mouse T-cell receptor {beta} chain. J Biol Chem. 2011 ;286(2):1189-95.
Nelson DC, Garbe J, Collin M. Cysteine proteinase SpeB from Streptococcus pyogenes - a potent modifier of immunologically important host and bacterial proteins. Biol Chem. 2011 ;392(12):1077-88.
Fribourg M, Moreno JL, Holloway T, Provasi D, Baki L, Mahajan R, Park G, Adney SK, Hatcher C, Eltit JM, et al. Decoding the signaling of a GPCR heteromeric complex reveals a unifying mechanism of action of antipsychotic drugs. Cell. 2011 ;147(5):1011-23.
Kim YJung, Hice RH, O'Brochta DA, Atkinson PW. DNA sequence requirements for hobo transposable element transposition in Drosophila melanogaster. Genetica. 2011 ;139(8):985-97.
Hsu J, Serrano D, Bhowmick T, Kumar K, Shen Y, Kuo YChia, Garnacho C, Muro S. Enhanced endothelial delivery and biochemical effects of α-galactosidase by ICAM-1-targeted nanocarriers for Fabry disease. J Control Release. 2011 ;149(3):323-31.
Chen CZ, Kulakova L, Southall N, Marugan JJ, Galkin A, Austin CP, Herzberg O, Zheng W. High-throughput Giardia lamblia viability assay using bioluminescent ATP content measurements. Antimicrob Agents Chemother. 2011 ;55(2):667-75.
Kawahara AY, Ohshima I, Kawakita A, Regier JC, Mitter C, Cummings MP, Davis DR, Wagner DL, De Prins J, Lopez-Vaamonde C. Increased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae). BMC Evol Biol. 2011 ;11:182.
S Dennison M, Sutherland LL, Jaeger FH, Anasti KM, Parks R, Stewart S, Bowman C, Xia S-M, Zhang R, Shen X, et al. Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41. PLoS One. 2011 ;6(11):e27824.
Walker ML, Vanderah DJ, Rubinson KA. In-situ characterization of self-assembled monolayers of water-soluble oligo(ethylene oxide) compounds. Colloids Surf B Biointerfaces. 2011 ;82(2):450-5.
Esnault C, Palavesam A, Pilitt K, O'Brochta DA. Intrinsic characteristics of neighboring DNA modulate transposable element activity in Drosophila melanogaster. Genetics. 2011 ;187(1):319-31.