IBBR Publications

Found 365 results
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Kryshtafovych A, Fidelis K, Moult J. CASP8 results in context of previous experiments. Proteins. 2009 ;77 Suppl 9:217-28.
Guvench O, Mackerell AD. Computational evaluation of protein-small molecule binding. Curr Opin Struct Biol. 2009 ;19(1):56-61.
Guvench O, Mackerell AD. Computational fragment-based binding site identification by ligand competitive saturation. PLoS Comput Biol. 2009 ;5(7):e1000435.
Moult J, Fidelis K, Kryshtafovych A, Rost B, Tramontano A. Critical assessment of methods of protein structure prediction - Round VIII. Proteins. 2009 ;77 Suppl 9:1-4.
K Clark R, Walsh STR. Crystal structure of a 3B3 variant--a broadly neutralizing HIV-1 scFv antibody. Protein Sci. 2009 ;18(12):2429-41.
Back J, Malchiodi EL, Cho S, Scarpellino L, Schneider P, Kerzic MC, Mariuzza RA, Held W. Distinct conformations of Ly49 natural killer cell receptors mediate MHC class I recognition in trans and cis. Immunity. 2009 ;31(4):598-608.
Cozzetto D, Kryshtafovych A, Fidelis K, Moult J, Rost B, Tramontano A. Evaluation of template-based models in CASP8 with standard measures. Proteins. 2009 ;77 Suppl 9:18-28.
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. A minimal sequence code for switching protein structure and function. Proc Natl Acad Sci U S A. 2009 ;106(50):21149-54.
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure. 2009 ;17(2):151-9.
Jiang J, Zeng D, Li S. Photogenerated quinone methides as protein affinity labeling reagents. Chembiochem. 2009 ;10(4):635-8.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, Mackerell AD, Toth EA, Weber DJ. Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. Biochemistry. 2009 ;48(26):6202-12.
McElroy CA, Dohm JA, Walsh STR. Structural and biophysical studies of the human IL-7/IL-7Ralpha complex. Structure. 2009 ;17(1):54-65.
Melamud E, Moult J. Structural implication of splicing stochastics. Nucleic Acids Res. 2009 ;37(14):4862-72.
Galkin A, Li Z, Li L, Kulakova L, Pal LR, Dunaway-Mariano D, Herzberg O. Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase. Biochemistry. 2009 ;48(14):3186-96.
Velikovsky CA, Deng L, Tasumi S, Iyer LM, Kerzic MC, Aravind L, Pancer Z, Mariuzza RA. Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen. Nat Struct Mol Biol. 2009 ;16(7):725-30.
Li Y, Hofmann M, Wang Q, Teng L, Chlewicki LK, Pircher H, Mariuzza RA. Structure of natural killer cell receptor KLRG1 bound to E-cadherin reveals basis for MHC-independent missing self recognition. Immunity. 2009 ;31(1):35-46.
Dey B, Svehla K, Xu L, Wycuff D, Zhou T, Voss G, Phogat A, Chakrabarti BK, Li Y, Shaw G, et al. Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site. PLoS Pathog. 2009 ;5(5):e1000445.
Galkin A, Kulakova L, Wu R, Gong M, Dunaway-Mariano D, Herzberg O. X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia. Proteins. 2009 ;76(4):1049-53.