IBBR Publications

Found 365 results
Filters: Keyword is Protein Conformation  [Clear All Filters]
D Gallagher T, Kim S-K, Robinson H, Reddy PT. Active-site structure of class IV adenylyl cyclase and transphyletic mechanism. J Mol Biol. 2011 ;405(3):787-803.
Wang XXiang, Li Y, Yin Y, Mo M, Wang Q, Gao W, Wang L, Mariuzza RA. Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex. Proc Natl Acad Sci U S A. 2011 ;108(38):15960-5.
Kim M, Sun Z-YJ, Rand KD, Shi X, Song L, Cheng Y, Fahmy AF, Majumdar S, Ofek GA, Yang Y, et al. Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization. Nat Struct Mol Biol. 2011 ;18(11):1235-43.
Pan M, Kelman LM, Kelman Z. The archaeal PCNA proteins. Biochem Soc Trans. 2011 ;39(1):20-4.
Krueger S, Shin J-H, Raghunandan S, Curtis JE, Kelman Z. Atomistic ensemble modeling and small-angle neutron scattering of intrinsically disordered protein complexes: applied to minichromosome maintenance protein. Biophys J. 2011 ;101(12):2999-3007.
Kryshtafovych A, Fidelis K, Moult J. CASP9 results compared to those of previous CASP experiments. Proteins. 2011 ;79 Suppl 10:196-207.
Takayama Y, Schwieters CD, Grishaev A, Ghirlando R, G Clore M. Combined use of residual dipolar couplings and solution X-ray scattering to rapidly probe rigid-body conformational transitions in a non-phosphorylatable active-site mutant of the 128 kDa enzyme I dimer. J Am Chem Soc. 2011 ;133(3):424-7.
S Hasan S, Yamashita E, Ryan CM, Whitelegge JP, Cramer WA. Conservation of lipid functions in cytochrome bc complexes. J Mol Biol. 2011 ;414(1):145-62.
Moult J, Fidelis K, Kryshtafovych A, Tramontano A. Critical assessment of methods of protein structure prediction (CASP)--round IX. Proteins. 2011 ;79 Suppl 10:1-5.
Morrone A, McCully ME, Bryan PN, Brunori M, Daggett V, Gianni S, Travaglini-Allocatelli C. The denatured state dictates the topology of two proteins with almost identical sequence but different native structure and function. J Biol Chem. 2011 ;286(5):3863-72.
Busby B, Oashi T, Willis CD, Ackermann MA, Kontrogianni-Konstantopoulos A, Mackerell AD, Bloch RJ. Electrostatic interactions mediate binding of obscurin to small ankyrin 1: biochemical and molecular modeling studies. J Mol Biol. 2011 ;408(2):321-34.
Monastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A. Evaluation of disorder predictions in CASP9. Proteins. 2011 ;79 Suppl 10:107-18.
Mallajosyula SS, Mackerell AD. Influence of solvent and intramolecular hydrogen bonding on the conformational properties of o-linked glycopeptides. J Phys Chem B. 2011 ;115(38):11215-29.
Sakakibara N, Kasiviswanathan R, Kelman Z. Mutational analysis of conserved aspartic acid residues in the Methanothermobacter thermautotrophicus MCM helicase. Extremophiles. 2011 ;15(2):245-52.
Baniulis D, Zhang H, Zakharova T, S Hasan S, Cramer WA. Purification and crystallization of the cyanobacterial cytochrome b6f complex. Methods Mol Biol. 2011 ;684:65-77.
Cramer WA, S Hasan S, Yamashita E. The Q cycle of cytochrome bc complexes: a structure perspective. Biochim Biophys Acta. 2011 ;1807(7):788-802.
E Raman P, Yu W, Guvench O, Mackerell AD. Reproducing crystal binding modes of ligand functional groups using Site-Identification by Ligand Competitive Saturation (SILCS) simulations. J Chem Inf Model. 2011 ;51(4):877-96.
Godoy-Ruiz R, Krejcirikova A, D Gallagher T, Tugarinov V. Solution NMR evidence for symmetry in functionally or crystallographically asymmetric homodimers. J Am Chem Soc. 2011 ;133(49):19578-81.
Darian E, Guvench O, Yu B, Qu C-K, Mackerell AD. Structural mechanism associated with domain opening in gain-of-function mutations in SHP2 phosphatase. Proteins. 2011 ;79(5):1573-88.
Yin Y, Li Y, Kerzic MC, Martin R, Mariuzza RA. Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection. EMBO J. 2011 ;30(6):1137-48.
Kryshtafovych A, Moult J, Bartual SG, J Bazan F, Berman H, Casteel DE, Christodoulou E, Everett JK, Hausmann J, Heidebrecht T, et al. Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins. 2011 ;79 Suppl 10:6-20.