Publications

Filter Year

Influence of Mg2+ Distribution on the Stability of Folded States of the Twister Ribozyme Revealed Using Grand Canonical Monte Carlo and Generative Deep Learning Enhanced Sampling.
Sengul MY, MacKerell AD. 2023. Influence of Mg2+ Distribution on the Stability of Folded States of the Twister Ribozyme Revealed Using Grand Canonical Monte Carlo and Generative Deep Learning Enhanced Sampling. ACS omega 8(22): 19532-19546. DOI: 10.1021/acsomega.3c00931
Sedimentation behavior of quality and freeze-damaged aluminum-adjuvanted vaccines by wNMR.
Briggs KT, Taraban MB, Yu YB. 2023. Sedimentation behavior of quality and freeze-damaged aluminum-adjuvanted vaccines by <i>w</i>NMR. Human vaccines & immunotherapeutics 19(2): 2215152. DOI: 10.1080/21645515.2023.2215152
Fluorine-Functionalized Polyphosphazene Immunoadjuvant: Synthesis, Solution Behavior and In Vivo Potency.
Tagad HD, Marin A, Wang R, Yunus AS, Fuerst TR, Andrianov AK. 2023. Fluorine-Functionalized Polyphosphazene Immunoadjuvant: Synthesis, Solution Behavior and In Vivo Potency. Molecules (Basel, Switzerland) 28(10): . DOI: 10.3390/molecules28104218
Transglutaminase 2 binds to the CD44v6 cytoplasmic domain to stimulate CD44v6/ERK1/2 signaling and maintain an aggressive cancer phenotype.
Chen X, Adhikary G, Newland JJ, Xu W, Keillor JW, Weber DJ, Eckert RL. 2023. Transglutaminase 2 binds to the CD44v6 cytoplasmic domain to stimulate CD44v6/ERK1/2 signaling and maintain an aggressive cancer phenotype. Molecular cancer research : MCR : . DOI: 10.1158/1541-7786.MCR-23-0051
Structural investigations of the palmitoylated F13 envelope protein of Mpox virus.
Borkotoky S, Dey D. 2023. Structural investigations of the palmitoylated F13 envelope protein of Mpox virus. Journal of medical virology 95(5): e28798. DOI: 10.1002/jmv.28798
High performance anion exchange chromatography purification of probiotic bacterial extracellular vesicles enhances purity and anti-inflammatory efficacy.
Piroli NH, Reus LSC, Mamczarz Z, Khan S, Bentley WE, Jay SM. 2023. High performance anion exchange chromatography purification of probiotic bacterial extracellular vesicles enhances purity and anti-inflammatory efficacy. bioRxiv : the preprint server for biology : . DOI: 10.1101/2023.05.01.538917
Rootstock-induced scion resistance against tobacco mosaic virus is associated with the induction of defence-related transcripts and graft-transmissible mRNAs.
Kappagantu M, Brandon M, Tamukong YB, Culver JN. 2023. Rootstock-induced scion resistance against tobacco mosaic virus is associated with the induction of defence-related transcripts and graft-transmissible mRNAs. Molecular plant pathology : . DOI: 10.1111/mpp.13353
Electro-Biofabrication. Coupling Electrochemical and Biomolecular Methods to Create Functional Bio-Based Hydrogels.
Liu Y, Kim E, Lei M, Wu S, Yan K, Shen J, Bentley WE, Shi X, Qu X, Payne GF. 2023. Electro-Biofabrication. Coupling Electrochemical and Biomolecular Methods to Create Functional Bio-Based Hydrogels. Biomacromolecules : . DOI: 10.1021/acs.biomac.3c00132
Croquemort elicits activation of the immune deficiency pathway in ticks.
O'Neal AJ, Singh N, Rolandelli A, Laukaitis HJ, Wang X, Shaw DK, Young BD, Narasimhan S, Dutta S, Snyder GA, et al. 2023. Croquemort elicits activation of the immune deficiency pathway in ticks. Proceedings of the National Academy of Sciences of the United States of America 120(20): e2208673120. DOI: 10.1073/pnas.2208673120
Noncovalent PEGylation of protein and peptide therapeutics.
Andrianov AK. 2023. Noncovalent PEGylation of protein and peptide therapeutics. Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology : e1897. DOI: 10.1002/wnan.1897
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.
Yin R, Ribeiro-Filho HV, Lin V, Gowthaman R, Cheung M, Pierce BG. 2023. TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning. Nucleic acids research : . DOI: 10.1093/nar/gkad356
Structure-function Analyses Reveal Key Molecular Determinants of HIV-1 CRF01_AE Resistance to the Entry Inhibitor Temsavir.
Prévost J, Chen Y, Zhou F, Tolbert WD, Gasser R, Medjahed H, Gottumukkala S, Hessell AJ, Rao VB, Pozharski E, et al. 2023. Structure-function Analyses Reveal Key Molecular Determinants of HIV-1 CRF01_AE Resistance to the Entry Inhibitor Temsavir. bioRxiv : the preprint server for biology : . DOI: 10.1101/2023.04.17.537181
Analysis of the Adsorbed Vaccine Formulations Using Water Proton Nuclear Magnetic Resonance-Comparison with Optical Analytics.
Taraban MB, Ndung'u T, Karki P, Li K, Fung G, Kirkitadze M, Yu YB. 2023. Analysis of the Adsorbed Vaccine Formulations Using Water Proton Nuclear Magnetic Resonance-Comparison with Optical Analytics. Pharmaceutical research : . DOI: 10.1007/s11095-023-03528-7
Understanding the Molecular Basis for Homodimer Formation of the Pneumococcal Endolysin Cpl-1.
Alreja AB, Linden SB, Lee HR, Chao KL, Herzberg O, Nelson DC. 2023. Understanding the Molecular Basis for Homodimer Formation of the Pneumococcal Endolysin Cpl-1. ACS infectious diseases : . DOI: 10.1021/acsinfecdis.2c00627
Integrated Covalent Drug Design Workflow Using Site Identification by Ligand Competitive Saturation.
Yu W, Weber DJ, MacKerell AD. 2023. Integrated Covalent Drug Design Workflow Using Site Identification by Ligand Competitive Saturation. Journal of chemical theory and computation : . DOI: 10.1021/acs.jctc.3c00232