Publications

Filter Year

Untangling the effects of codon mutation and amino acid exchangeability.
Yampolsky LY, Stoltzfus A. 2005. Untangling the effects of codon mutation and amino acid exchangeability. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing : 433-44.
Signal-directed sequential assembly of biomolecules on patterned surfaces.
Yi H, Wu LQ, Ghodssi R, Rubloff GW, Payne GF, Bentley WE. 2005. Signal-directed sequential assembly of biomolecules on patterned surfaces. Langmuir : the ACS journal of surfaces and colloids 21(6): 2104-7.
Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution.
Liu S, Lu Z, Han Y, Melamud E, Dunaway-Mariano D, Herzberg O. 2005. Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution. Biochemistry 44(8): 2949-62.
Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces.
Li Y, Huang Y, Swaminathan CP, Smith-Gill SJ, Mariuzza RA. 2005. Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces. Structure (London, England : 1993) 13(2): 297-307.
Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development.
Padmanabhan MS, Goregaoker SP, Golem S, Shiferaw H, Culver JN. 2005. Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development. Journal of virology 79(4): 2549-58.
Stereocontrolled solid-phase synthesis of a 90-membered library of indoline-alkaloid-like polycycles from an enantioenriched aminoindoline scaffold.
Gan Z, Reddy PT, Quevillon S, Couve-Bonnaire S, Arya P. 2005. Stereocontrolled solid-phase synthesis of a 90-membered library of indoline-alkaloid-like polycycles from an enantioenriched aminoindoline scaffold. Angewandte Chemie (International ed. in English) 44(9): 1366-8.
Structural polymorphism of Methanothermobacter thermautotrophicus MCM.
Chen YJ, Yu X, Kasiviswanathan R, Shin JH, Kelman Z, Egelman EH. 2005. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. Journal of molecular biology 346(2): 389-94.
piggyBac internal sequences are necessary for efficient transformation of target genomes.
Li X, Harrell RA, Handler AM, Beam T, Hennessy K, Fraser MJ. 2005. piggyBac internal sequences are necessary for efficient transformation of target genomes. Insect molecular biology 14(1): 17-30.
Use of a restriction enzyme-digested PCR product as substrate for helicase assays.
Shin JH, Reeve JN, Kelman Z. 2005. Use of a restriction enzyme-digested PCR product as substrate for helicase assays. Nucleic acids research 33(1): e8.
NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog.
Yeh DC, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J. 2005. NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog. Protein science : a publication of the Protein Society 14(2): 424-30.
Vesicle--biopolymer gels: networks of surfactant vesicles connected by associating biopolymers.
Lee JH, Gustin JP, Chen T, Payne GF, Raghavan SR. 2005. Vesicle--biopolymer gels: networks of surfactant vesicles connected by associating biopolymers. Langmuir : the ACS journal of surfaces and colloids 21(1): 26-33.
Novel retinoic acid metabolism blocking agents endowed with multiple biological activities are efficient growth inhibitors of human breast and prostate cancer cells in vitro and a human breast tumor xenograft in nude mice.
Patel JB, Huynh CK, Handratta VD, Gediya LK, Brodie AM, Goloubeva OG, Clement OO, Nanne IP, Soprano DR, Njar VC. 2004. Novel retinoic acid metabolism blocking agents endowed with multiple biological activities are efficient growth inhibitors of human breast and prostate cancer cells in vitro and a human breast tumor xenograft in nude mice. Journal of medicinal chemistry 47(27): 6716-29.
Studying multiprotein complexes by multisignal sedimentation velocity analytical ultracentrifugation.
Balbo A, Minor KH, Velikovsky CA, Mariuzza RA, Peterson CB, Schuck P. 2005. Studying multiprotein complexes by multisignal sedimentation velocity analytical ultracentrifugation. Proceedings of the National Academy of Sciences of the United States of America 102(1): 81-6.
Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation.
Lim K, Doseeva V, Demirkan ES, Pullalarevu S, Krajewski W, Galkin A, Howard A, Herzberg O. 2005. Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation. Proteins 58(3): 759-63.
Structural basis for peptidoglycan binding by peptidoglycan recognition proteins.
Guan R, Roychowdhury A, Ember B, Kumar S, Boons GJ, Mariuzza RA. 2004. Structural basis for peptidoglycan binding by peptidoglycan recognition proteins. Proceedings of the National Academy of Sciences of the United States of America 101(49): 17168-73.