Publications

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Critical assessment of methods of protein structure prediction (CASP)-Round XV.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2023. Critical assessment of methods of protein structure prediction (CASP)-Round XV. Proteins : . DOI: 10.1002/prot.26617
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
Lensink MF, Brysbaert G, Raouraoua N, Bates PA, Giulini M, Honorato RV, van Noort C, Teixeira JMC, Bonvin AMJJ, Kong R, et al. 2023. Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment. Proteins : . DOI: 10.1002/prot.26609
Effects of glycans and hinge on dynamics in the IgG1 Fc.
Bergonzo C, Hoopes JT, Kelman Z, Gallagher DT. 2023. Effects of glycans and hinge on dynamics in the IgG1 Fc. Journal of biomolecular structure & dynamics : 1-9. DOI: 10.1080/07391102.2023.2270749
Thermal Characterization and Interaction of the Subunits from the Multimeric Bacteriophage Endolysin PlyC.
Hoopes JT, Heselpoth RD, Schwarz FP, Nelson DC. 2023. Thermal Characterization and Interaction of the Subunits from the Multimeric Bacteriophage Endolysin PlyC. Biology 12(10): . DOI: 10.3390/biology12101277
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.
Kryshtafovych A, Montelione GT, Rigden DJ, Mesdaghi S, Karaca E, Moult J. 2023. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins : . DOI: 10.1002/prot.26584
SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors.
Choy C, Chen J, Li J, Gallagher DT, Lu J, Wu D, Zou A, Hemani H, Baptiste BA, Wichmann E, et al. 2023. SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors. Nature communications 14(1): 6725. DOI: 10.1038/s41467-023-42430-z
Structure-function analyses reveal key molecular determinants of HIV-1 CRF01_AE resistance to the entry inhibitor temsavir.
Prévost J, Chen Y, Zhou F, Tolbert WD, Gasser R, Medjahed H, Nayrac M, Nguyen DN, Gottumukkala S, Hessell AJ, et al. 2023. Structure-function analyses reveal key molecular determinants of HIV-1 CRF01_AE resistance to the entry inhibitor temsavir. Nature communications 14(1): 6710. DOI: 10.1038/s41467-023-42500-2
Dendritic Cell-Mediated Cross-Priming by a Bispecific Neutralizing Antibody Boosts Cytotoxic T Cell Responses and Protects Mice against SARS-CoV-2.
Lázaro-Gorines R, Pérez P, Heras-Murillo I, Adán-Barrientos I, Albericio G, Astorgano D, Flores S, Luczkowiak J, Labiod N, Harwood SL, et al. 2023. Dendritic Cell-Mediated Cross-Priming by a Bispecific Neutralizing Antibody Boosts Cytotoxic T Cell Responses and Protects Mice against SARS-CoV-2. Advanced science (Weinheim, Baden-Wurttemberg, Germany) : e2304818. DOI: 10.1002/advs.202304818
Non-β Lactam Inhibitors of the Serine β-Lactamase blaCTX-M15 in Drug-Resistant Salmonella typhi.
Ahmad F, Parvaiz N, MacKerell AD, Azam SS. 2023. Non-β Lactam Inhibitors of the Serine β-Lactamase blaCTX-M15 in Drug-Resistant <i>Salmonella typhi</i>. Journal of chemical information and modeling : . DOI: 10.1021/acs.jcim.3c00780
Monitoring Protein Complexation with Polyphosphazene Polyelectrolyte Using Automated Dynamic Light Scattering Titration and Asymmetric Flow Field Flow Fractionation and Protein Recognition Immunoassay.
Lueckheide M, Marin A, Tagad HD, Posey ND, Prabhu VM, Andrianov AK. 2023. Monitoring Protein Complexation with Polyphosphazene Polyelectrolyte Using Automated Dynamic Light Scattering Titration and Asymmetric Flow Field Flow Fractionation and Protein Recognition Immunoassay. ACS polymers Au 3(5): 354-364. DOI: 10.1021/acspolymersau.3c00006
A unique borrelial protein facilitates microbial immune evasion.
Foor SD, Brangulis K, Shakya AK, Rana VS, Bista S, Kitsou C, Ronzetti M, Alreja AB, Linden SB, Altieri AS, et al. 2023. A unique borrelial protein facilitates microbial immune evasion. mBio : e0213523. DOI: 10.1128/mbio.02135-23
Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer.
Mohanty A, Nam A, Srivastava S, Jones J, Lomenick B, Singhal SS, Guo L, Cho H, Li A, Behal A, et al. 2023. Acquired resistance to KRAS G12C small-molecule inhibitors via genetic/nongenetic mechanisms in lung cancer. Science advances 9(41): eade3816. DOI: 10.1126/sciadv.ade3816
Lysosomal Therapies and Drug Delivery Strategies: An Overview.
Muro S. 2023. Lysosomal Therapies and Drug Delivery Strategies: An Overview. Advanced drug delivery reviews : 115112. DOI: 10.1016/j.addr.2023.115112
Zika virus NS4B protein targets TANK-binding kinase 1 and inhibits type I interferon production.
Sarratea MB, Alberti AS, Redolfi DM, Truant SN, Iannantuono Lopez LV, Bivona AE, Mariuzza RA, Fernández MM, Malchiodi EL. 2023. Zika virus NS4B protein targets TANK-binding kinase 1 and inhibits type I interferon production. Biochimica et biophysica acta. General subjects : 130483. DOI: 10.1016/j.bbagen.2023.130483
Initial exploration of a novel fusion protein, IL-4/IL-34/IL-10, which promotes cardiac allograft survival mice through alloregulation.
Lee YS, Cheng IT, Raquel GR, Weber DJ, Scalea JR. 2023. Initial exploration of a novel fusion protein, IL-4/IL-34/IL-10, which promotes cardiac allograft survival mice through alloregulation. Innate immunity 29(7): 150-158. DOI: 10.1177/17534259231186239