IBBR Publications

Temoҫin Z, Kim E, Li J, Panzella L, Alfieri MLaura, Napolitano A, Kelly DL, Bentley WE, Payne GF. The Analgesic Acetaminophen and the Antipsychotic Clozapine can each Redox-Cycle with Melanin. ACS Chem Neurosci. 2017 .

Brinson RG, Ghasriani H, Hodgson DJ, Adams KM, McEwen I, Freedberg DI, Chen K, Keire DA, Aubin Y, Marino JP. Application of 2D-NMR with room temperature NMR probes for the assessment of the higher order structure of filgrastim. J Pharm Biomed Anal. 2017 ;141:229-233.

Wang T, Anderson KW, Turko IV. Assessment of Extracellular Vesicles Purity Using Proteomic Standards. Anal Chem [Internet]. 2017 ;89(20). Available from: http://pubs.acs.org/doi/10.1021/acs.analchem.7b03119

Borrman T, Cimons J, Cosiano M, Purcaro M, Pierce BG, Baker BM, Weng Z. ATLAS: A database linking binding affinities with structures for wild-type and mutant TCR-pMHC complexes. Proteins. 2017 .

Banis GE, Winkler T, Barton P, Chocron SE, Kim E, Kelly DL, Payne GF, Ben-Yoav H, Ghodssi R. The Binding Effect of Proteins on Medications and Its Impact on Electrochemical Sensing: Antipsychotic Clozapine as a Case Study. Pharmaceuticals (Basel). 2017 ;10(3).

Martinez AP, Qamar B, Fuerst TR, Muro S, Andrianov AK. Biodegradable "Smart" Polyphosphazenes with Intrinsic Multi-Functionality as Intracellular Protein Delivery Vehicles. Biomacromolecules. 2017 .

Zang F, Chu S, Gerasopoulos K, Culver JN, Ghodssi R. Biofabrication of Tobacco mosaic virus-nanoscaffolded supercapacitors via temporal capillary microfluidics. Nanotechnology. 2017 ;28(26):265301.

Burns LA, Faver JC, Zheng Z, Marshall MS, Smith DGA, Vanommeslaeghe K, Mackerell AD, Merz KM, C Sherrill D. The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions. J Chem Phys. 2017 ;147(16):161727.

Karageorgos I, Gallagher ES, Galvin C, D Gallagher T, Hudgens JW. Biophysical characterization and structure of the Fab fragment from the NIST reference antibody, RM 8671. Biologicals. 2017 .

Pal LR, Kundu K, Yin Y, Moult J. CAGI4 Crohn's exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease. Hum Mutat. 2017 .

Pal LR, Kundu K, Yin Y, Moult J. CAGI4 SickKids clinical genomes challenge: A pipeline for identifying pathogenic variants. Hum Mutat. 2017 .

Zang F, Gerasopoulos K, Brown AD, Culver JN, Ghodssi R. Capillary microfluidics-assembled virus-like particle bio-nano-receptor interfaces for label-free biosensing. ACS Appl Mater Interfaces. 2017 .

Quigley J, V Hughitt K, Velikovsky CA, Mariuzza RA, El-Sayed NM, Briken V. The Cell Wall Lipid PDIM Contributes to Phagosomal Escape and Host Cell Exit of Mycobacterium tuberculosis. MBio. 2017 ;8(2).

Huang J, Rauscher S, Nawrocki G, Ran T, Feig M, de Groot BL, Grubmüller H, Mackerell AD. CHARMM36m: an improved force field for folded and intrinsically disordered proteins. Nat Methods. 2017 ;14(1):71-73.

Jo S, Cheng X, Lee J, Kim S, Park S-J, Patel DS, Beaven AH, Lee KIl, Rui H, Park S, et al. CHARMM-GUI 10 years for biomolecular modeling and simulation. J Comput Chem. 2017 ;38(15):1114-1124.

Kim J, Sinha S, Solomon M, Perez-Herrero E, Hsu J, Tsinas Z, Muro S. Co-coating of receptor-targeted drug nanocarriers with anti-phagocytic moieties enhances specific tissue uptake versus non-specific phagocytic clearance. Biomaterials. 2017 ;147:14-25.

Gao S, Linden SB, Nelson DC. Complete Genome Sequence of Klebsiella pneumoniae Phages SopranoGao, MezzoGao, and AltoGao. Genome Announc. 2017 ;5(45).

Yu W, Mackerell AD. Computer-Aided Drug Design Methods. Methods Mol Biol. 2017 ;1520:85-106.

Mazur SJ, Gallagher ES, Debnath S, Durell SR, Anderson KW, Jenkins LMMiller, Appella E, Hudgens JW. Conformational Changes in Active and Inactive States of Human PP2Cα Characterized by Hydrogen/Deuterium Exchange-Mass Spectrometry. Biochemistry [Internet]. 2017 . Available from: http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01220

Yang M, Huang J, Simon R, Wang L-X, Mackerell AD. Conformational Heterogeneity of the HIV Envelope Glycan Shield. Sci Rep. 2017 ;7(1):4435.

Yang M, Simon R, Mackerell AD. Conformational Preference of Serogroup B Salmonella O Polysaccharide in Presence and Absence of the Monoclonal Antibody Se155-4. J Phys Chem B. 2017 ;121(15):3412-3423.

Liu Y, Li J, Tschirhart T, Terrell JL, Kim E, Tsao C-Y, Kelly DL, Bentley WE, Payne GF. Connecting Biology to Electronics: Molecular Communication via Redox Modality. Adv Healthc Mater. 2017 .

Mckay R, Hauk P, Wu H-C, Pottash AEli, Shang W, Terrell J, Payne GF, Bentley WE. Controlling Localization of E. coli Populations Using a Two-Part Synthetic Motility Circuit: An Accelerator and Brake. Biotechnol Bioeng. 2017 .

Wu H-C, Quan DN, Tsao C-Y, Liu Y, Terrell JL, Luo X, Yang J-C, Payne GF, Bentley WE. Cover Image, Volume 114, Number 1, January 2017. Biotechnol Bioeng. 2017 ;114(1):i.

Häcker I, Harrell RA, Eichner G, Pilitt KL, O'Brochta DA, Handler AM, Schetelig MF. Cre/lox-Recombinase-Mediated Cassette Exchange for Reversible Site-Specific Genomic Targeting of the Disease Vector, Aedes aegypti. Sci Rep. 2017 ;7:43883.