Publications

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Engineering substrate preference in subtilisin: structural and kinetic analysis of a specificity mutant.
Ruan B, London V, Fisher KE, Gallagher DT, Bryan PN. 2008. Engineering substrate preference in subtilisin: structural and kinetic analysis of a specificity mutant. Biochemistry 47(25): 6628-36. DOI: 10.1021/bi800089f
Coagulation of tobacco mosaic virus in alcohol-water-LiCl solutions.
Lee SY, Lim JS, Culver JN, Harris MT. 2008. Coagulation of tobacco mosaic virus in alcohol-water-LiCl solutions. Journal of colloid and interface science 324(1-2): 92-8. DOI: 10.1016/j.jcis.2008.04.074
Flexibility of aromatic residues in the active-site gorge of acetylcholinesterase: X-ray versus molecular dynamics.
Xu Y, Colletier JP, Weik M, Jiang H, Moult J, Silman I, Sussman JL. 2008. Flexibility of aromatic residues in the active-site gorge of acetylcholinesterase: X-ray versus molecular dynamics. Biophysical journal 95(5): 2500-11. DOI: 10.1529/biophysj.108.129601
Studies with the human cohesin establishment factor, ChlR1. Association of ChlR1 with Ctf18-RFC and Fen1.
Farina A, Shin JH, Kim DH, Bermudez VP, Kelman Z, Seo YS, Hurwitz J. 2008. Studies with the human cohesin establishment factor, ChlR1. Association of ChlR1 with Ctf18-RFC and Fen1. The Journal of biological chemistry 283(30): 20925-36. DOI: 10.1074/jbc.M802696200
The Design and Synthesis of Highly Branched and Spherically Symmetric Fluorinated Oils and Amphiles.
Jiang ZX, Yu YB. 2007. The Design and Synthesis of Highly Branched and Spherically Symmetric Fluorinated Oils and Amphiles. Tetrahedron 63(19): 3982-3988.
Extracellular proteolytic activities expressed by Bacillus pumilus isolated from endodontic and periodontal lesions.
Johnson BT, Shaw LN, Nelson DC, Mayo JA. 2008. Extracellular proteolytic activities expressed by Bacillus pumilus isolated from endodontic and periodontal lesions. Journal of medical microbiology 57(Pt 5): 643-651. DOI: 10.1099/jmm.0.47754-0
Synthesis of HIV-1 Psi-site RNA sequences with site specific incorporation of the fluorescent base analog 2-aminopurine.
Zhao C, Marino JP. 2007. Synthesis of HIV-1 Psi-site RNA sequences with site specific incorporation of the fluorescent base analog 2-aminopurine. Tetrahedron 63(17): 3575-3584.
Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors.
Deng L, Cho S, Malchiodi EL, Kerzic MC, Dam J, Mariuzza RA. 2008. Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors. The Journal of biological chemistry 283(24): 16840-9. DOI: 10.1074/jbc.M801526200
Electrogenic proton-pumping capabilities of the m-fast and m-slow photocycles of bacteriorhodopsin.
Hendler RW, Meuse CW. 2008. Electrogenic proton-pumping capabilities of the m-fast and m-slow photocycles of bacteriorhodopsin. Biochemistry 47(19): 5396-405. DOI: 10.1021/bi701748n
The ability of actinic light to modify the bacteriorhodopsin photocycle revisited: heterogeneity vs photocooperativity.
Hendler RW, Shrager RI, Meuse CW. 2008. The ability of actinic light to modify the bacteriorhodopsin photocycle revisited: heterogeneity vs photocooperativity. Biochemistry 47(19): 5406-16. DOI: 10.1021/bi701749y
Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA.
Malashkevich VN, Varney KM, Garrett SC, Wilder PT, Knight D, Charpentier TH, Ramagopal UA, Almo SC, Weber DJ, Bresnick AR. 2008. Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA. Biochemistry 47(18): 5111-26. DOI: 10.1021/bi702537s
Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands.
Turner KB, Brinson RG, Yi-Brunozzi HY, Rausch JW, Miller JT, Le Grice SF, Marino JP, Fabris D. 2008. Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands. Nucleic acids research 36(8): 2799-810. DOI: 10.1093/nar/gkn129
Chitosan fibers: versatile platform for nickel-mediated protein assembly.
Shi XW, Wu HC, Liu Y, Tsao CY, Wang K, Kobatake E, Bentley WE, Payne GF. 2008. Chitosan fibers: versatile platform for nickel-mediated protein assembly. Biomacromolecules 9(5): 1417-23. DOI: 10.1021/bm800072e
The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase.
Shin JH, Heo GY, Kelman Z. 2008. The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase. Journal of bacteriology 190(11): 4091-4. DOI: 10.1128/JB.00233-08
The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes.
Chao KL, Lim K, Lehmann C, Doseeva V, Howard AJ, Schwarz FP, Herzberg O. 2008. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Proteins 72(1): 506-9. DOI: 10.1002/prot.22046