IBBR Publications

Found 72 results
Filters: Keyword is Phylogeny  [Clear All Filters]
2008
Subramanian RA, Akala OO, Adejinmi JO, O'Brochta DA. Topi, an IS630/Tc1/mariner-type transposable element in the African malaria mosquito, Anopheles gambiae. Gene. 2008 ;423(1):63-71.
2007
Orgil U, Araki H, Tangchaiburana S, Berkey R, Xiao S. Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana. Genetics. 2007 ;176(4):2317-33.
Desjardins CA, Regier JC, Mitter C. Phylogeny of pteromalid parasitic wasps (Hymenoptera: Pteromalidae): initial evidence from four protein-coding nuclear genes. Mol Phylogenet Evol. 2007 ;45(2):454-69.
2006
Gopalan V, Qiu W-G, Chen MZ, Stoltzfus A. Nexplorer: phylogeny-based exploration of sequence family data. Bioinformatics. 2006 ;22(1):120-1.
He Y, Rozak DA, Sari N, Chen Y, Bryan PN, Orban J. Structure, dynamics, and stability variation in bacterial albumin binding modules: implications for species specificity. Biochemistry. 2006 ;45(33):10102-9.
2005
Arensburger P, Kim Y-J, Orsetti J, Aluvihare C, O'Brochta DA, Atkinson PW. An active transposable element, Herves, from the African malaria mosquito Anopheles gambiae. Genetics. 2005 ;169(2):697-708.
H Y Jiang R, Dawe AL, Weide R, van Staveren M, Peters S, Nuss DL, Govers F. Elicitin genes in Phytophthora infestans are clustered and interspersed with various transposon-like elements. Mol Genet Genomics. 2005 ;273(1):20-32.
Regier JC, Shultz JW, Kambic RE. Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic. Proc Biol Sci. 2005 ;272(1561):395-401.
Regier JC, Wilson HM, Shultz JW. Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes. Mol Phylogenet Evol. 2005 ;34(1):147-58.
Regier JC, Paukstadt U, Paukstadt LH, Mitter C, Peigler RS. Phylogenetics of eggshell morphogenesis in Antheraea (lepidoptera: saturniidae): unique origin and repeated reduction of the aeropyle crown. Syst Biol. 2005 ;54(2):254-67.
2004
Segers GC, Regier JC, Nuss DL. Evidence for a role of the regulator of G-protein signaling protein CPRGS-1 in Galpha subunit CPG-1-mediated regulation of fungal virulence, conidiation, and hydrophobin synthesis in the chestnut blight fungus Cryphonectria parasitica. Eukaryot Cell. 2004 ;3(6):1454-63.
Qiu W-G, Schisler N, Stoltzfus A. The evolutionary gain of spliceosomal introns: sequence and phase preferences. Mol Biol Evol. 2004 ;21(7):1252-63.
Laksanalamai P, Whitehead TA, Robb FT. Minimal protein-folding systems in hyperthermophilic archaea. Nat Rev Microbiol. 2004 ;2(4):315-24.
Xiao S, Emerson B, Ratanasut K, Patrick E, O'Neill C, Bancroft I, Turner JG. Origin and maintenance of a broad-spectrum disease resistance locus in Arabidopsis. Mol Biol Evol. 2004 ;21(9):1661-72.
Kanoksilapatham W, Gonzalez JM, Maeder DL, DiRuggiero J, Robb FT. A proposal to rename the hyperthermophile Pyrococcus woesei as Pyrococcus furiosus subsp. woesei. Archaea. 2004 ;1(4):277-83.
Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Slepova TV, Bonch-Osmolovskaya EA, Robb FT. Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park. Int J Syst Evol Microbiol. 2004 ;54(Pt 6):2353-9.
2003
Shin J-H, Grabowski B, Kasiviswanathan R, Bell SD, Kelman Z. Regulation of minichromosome maintenance helicase activity by Cdc6. J Biol Chem. 2003 ;278(39):38059-67.
Baccam P, Thompson RJ, Li Y, Sparks WO, Belshan M, Dorman KS, Wannemuehler Y, J Oaks L, Cornette JL, Carpenter S. Subpopulations of equine infectious anemia virus Rev coexist in vivo and differ in phenotype. J Virol. 2003 ;77(22):12122-31.
2002
Teplyakov A, Obmolova G, Tordova M, Thanki N, Bonander N, Eisenstein E, Howard AJ, Gilliland GL. Crystal structure of the YjeE protein from Haemophilus influenzae: a putative Atpase involved in cell wall synthesis. Proteins. 2002 ;48(2):220-6.
Birkeland N-K, Anensen H, Knaevelsrud I, Kristoffersen W, Bjørås M, Robb FT, Klungland A, Bjelland S. Methylpurine DNA glycosylase of the hyperthermophilic archaeon Archaeoglobus fulgidus. Biochemistry. 2002 ;41(42):12697-705.
2001
Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Tourova TP, Kato C, Bonch-Osmolovskaya EA, Robb FT. Carboxydobrachium pacificum gen. nov., sp. nov., a new anaerobic, thermophilic, CO-utilizing marine bacterium from Okinawa Trough. Int J Syst Evol Microbiol. 2001 ;51(Pt 1):141-9.
Regier JC, Shultz JW. Elongation factor-2: a useful gene for arthropod phylogenetics. Mol Phylogenet Evol. 2001 ;20(1):136-48.
Regier JC, Mitter C, Friedlander TP, Peigler RS. Re: Phylogenetic relationships in Sphingidae (Insecta: Lepidoptera): initial evidence from two nuclear genes. Mol Phylogenet Evol. 2001 ;20(2):311-6.
2000
Kelman Z. DNA replication in the third domain (of life). Curr Protein Pept Sci. 2000 ;1(2):139-54.
Mitchell A, Mitter C, Regier JC. More taxa or more characters revisited: combining data from nuclear protein-encoding genes for phylogenetic analyses of Noctuoidea (Insecta: Lepidoptera). Syst Biol. 2000 ;49(2):202-24.