IBBR Publications

Found 365 results
Filters: Keyword is Protein Conformation  [Clear All Filters]
Shim J, Zhu X, Best RB, Mackerell AD. (Ala)(4)-X-(Ala)4 as a model system for the optimization of the χ1 and χ2 amino acid side-chain dihedral empirical force field parameters. J Comput Chem. 2013 ;34(7):593-603.
Huang J, Mackerell AD. CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data. J Comput Chem. 2013 ;34(25):2135-45.
Mallajosyula SS, Adams KM, Barchi JJ, Mackerell AD. Conformational determinants of the activity of antiproliferative factor glycopeptide. J Chem Inf Model. 2013 ;53(5):1127-37.
Kurouski D, Luo H, Sereda V, Robb FT, Lednev IK. Deconstruction of stable cross-Beta fibrillar structures into toxic and nontoxic products using a mutated archaeal chaperonin. ACS Chem Biol. 2013 ;8(9):2095-101.
Georgiev IS, Doria-Rose NA, Zhou T, Kwon YDo, Staupe RP, Moquin S, Chuang G-Y, Louder MK, Schmidt SD, Altae-Tran HR, et al. Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization. Science. 2013 ;340(6133):751-6.
Huang RY-C, Hudgens JW. Effects of desialylation on human α1-acid glycoprotein-ligand interactions. Biochemistry. 2013 ;52(40):7127-36.
Lakkaraju SKaushik, Xue F, Faden AI, Mackerell AD. Estimation of ligand efficacies of metabotropic glutamate receptors from conformational forces obtained from molecular dynamics simulations. J Chem Inf Model. 2013 ;53(6):1337-49.
Hendler RW, Meuse CW, Smith PD, Kakareka JW. Further studies with isolated absolute infrared spectra of bacteriorhodopsin photocycle intermediates: conformational changes and possible role of a new proton-binding center. Appl Spectrosc. 2013 ;67(1):73-85.
S Hasan S, Stofleth JT, Yamashita E, Cramer WA. Lipid-induced conformational changes within the cytochrome b6f complex of oxygenic photosynthesis. Biochemistry. 2013 ;52(15):2649-54.
Baniulis D, S Hasan S, Stofleth JT, Cramer WA. Mechanism of enhanced superoxide production in the cytochrome b(6)f complex of oxygenic photosynthesis. Biochemistry. 2013 ;52(50):8975-83.
Deshmukh L, Schwieters CD, Grishaev A, Ghirlando R, Baber JL, G Clore M. Structure and dynamics of full-length HIV-1 capsid protein in solution. J Am Chem Soc. 2013 ;135(43):16133-47.
S Hasan S, Yamashita E, Cramer WA. Transmembrane signaling and assembly of the cytochrome b6f-lipidic charge transfer complex. Biochim Biophys Acta. 2013 ;1827(11-12):1295-308.
Erzurumlu Y, Kose FAydin, Gozen O, Gozuacik D, Toth EA, Ballar P. A unique IBMPFD-related P97/VCP mutation with differential binding pattern and subcellular localization. Int J Biochem Cell Biol. 2013 ;45(4):773-82.