IBBR Publications

Found 17 results
Filters: Keyword is Protein Interaction Mapping  [Clear All Filters]
2013
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JPGLM, Trellet M, Bonvin AMJJ, Cui M, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 2013 ;81(11):1980-7.
2011
Jiang J, Zhang J, Li S. Detecting protein interactions in live cells via complementation of a hydrolysis-deficient β-lactamase. Chem Commun (Camb). 2011 ;47(1):182-4.
Dykstra PH, Roy V, Byrd C, Bentley WE, Ghodssi R. Microfluidic electrochemical sensor array for characterizing protein interactions with various functionalized surfaces. Anal Chem. 2011 ;83(15):5920-7.
Bonsor DA, Postel S, Pierce BG, Wang N, Zhu P, Buonpane RA, Weng Z, Kranz DM, Sundberg EJ. Molecular basis of a million-fold affinity maturation process in a protein-protein interaction. J Mol Biol. 2011 ;411(2):321-8.
2010
Li Z, Santangelo TJ, Cuboňová L'ubomíra, Reeve JN, Kelman Z. Affinity purification of an archaeal DNA replication protein network. MBio. 2010 ;1(5).
Hwang H, Vreven T, Pierce BG, Hung J-H, Weng Z. Performance of ZDOCK and ZRANK in CAPRI rounds 13-19. Proteins. 2010 ;78(15):3104-10.
2009
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure. 2009 ;17(2):151-9.
2008
Hwang H, Pierce BG, Mintseris J, Janin J, Weng Z. Protein-protein docking benchmark version 3.0. Proteins. 2008 ;73(3):705-9.
Wiehe K, Peterson MW, Pierce BG, Mintseris J, Weng Z. Protein-protein docking: overview and performance analysis. Methods Mol Biol. 2008 ;413:283-314.
2007
Wiehe K, Pierce BG, Tong WWei, Hwang H, Mintseris J, Weng Z. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins. 2007 ;69(4):719-25.
2006
Unger R, Moult J. Towards computing with proteins. Proteins. 2006 ;63(1):53-64.
2005
Moult J. A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction. Curr Opin Struct Biol. 2005 ;15(3):285-9.
Pierce BG, Tong W, Weng Z. M-ZDOCK: a grid-based approach for Cn symmetric multimer docking. Bioinformatics. 2005 ;21(8):1472-8.
Mintseris J, Wiehe K, Pierce BG, Anderson R, Chen R, Janin J, Weng Z. Protein-Protein Docking Benchmark 2.0: an update. Proteins. 2005 ;60(2):214-6.
Cho S, Swaminathan CP, Yang J, Kerzic MC, Guan R, Kieke MC, Kranz DM, Mariuzza RA, Sundberg EJ. Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction. Structure. 2005 ;13(12):1775-87.
Wiehe K, Pierce BG, Mintseris J, Tong WWei, Anderson R, Chen R, Weng Z. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins. 2005 ;60(2):207-13.
2003
Janin J, Henrick K, Moult J, Eyck LTen, Sternberg MJE, Vajda S, Vakser I, Wodak SJ. CAPRI: a Critical Assessment of PRedicted Interactions. Proteins. 2003 ;52(1):2-9.