IBBR Publications

Found 87 results
Filters: Keyword is Sequence Homology, Amino Acid  [Clear All Filters]
2015
Cheung CSF, Anderson KW, Wang M, Turko IV. Natural flanking sequences for peptides included in a quantification concatamer internal standard. Anal Chem. 2015 ;87(2):1097-102.
2014
Georgiev IS, Rudicell RS, Saunders KO, Shi W, Kirys T, McKee K, O'Dell S, Chuang G-Y, Yang Z-Y, Ofek GA, et al. Antibodies VRC01 and 10E8 neutralize HIV-1 with high breadth and potency even with Ig-framework regions substantially reverted to germline. J Immunol. 2014 ;192(3):1100-6.
Agarwal R, Zakharov S, S Hasan S, Ryan CM, Whitelegge JP, Cramer WA. Structure-function of cyanobacterial outer-membrane protein, Slr1270: homolog of Escherichia coli drug export/colicin import protein, TolC. FEBS Lett. 2014 ;588(21):3793-801.
2012
He Y, Chen Y, Alexander PA, Bryan PN, Orban J. Mutational tipping points for switching protein folds and functions. Structure. 2012 ;20(2):283-91.
2011
Wang XXiang, Li Y, Yin Y, Mo M, Wang Q, Gao W, Wang L, Mariuzza RA. Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex. Proc Natl Acad Sci U S A. 2011 ;108(38):15960-5.
Sakakibara N, Kasiviswanathan R, Kelman Z. Mutational analysis of conserved aspartic acid residues in the Methanothermobacter thermautotrophicus MCM helicase. Extremophiles. 2011 ;15(2):245-52.
2008
Sun Y, Makarava N, Lee C-I, Laksanalamai P, Robb FT, Baskakov IV. Conformational stability of PrP amyloid fibrils controls their smallest possible fragment size. J Mol Biol. 2008 ;376(4):1155-67.
Wang W, Yang X, Tangchaiburana S, Ndeh R, Markham JE, Tsegaye Y, Dunn TM, Wang G-L, Bellizzi M, Parsons JF, et al. An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis. Plant Cell. 2008 ;20(11):3163-79.
Deng L, Cho S, Malchiodi EL, Kerzic MC, Dam J, Mariuzza RA. Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors. J Biol Chem. 2008 ;283(24):16840-9.
He Y, Chen Y, Alexander P, Bryan PN, Orban J. NMR structures of two designed proteins with high sequence identity but different fold and function. Proc Natl Acad Sci U S A. 2008 ;105(38):14412-7.
Pancer Z, Mariuzza RA. The oldest antibodies newly discovered. Nat Biotechnol. 2008 ;26(4):402-3.
Parsons LM, Grishaev A, Bax A. The periplasmic domain of TolR from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data. Biochemistry. 2008 ;47(10):3131-42.
Narayanan BC, Niu W, Han Y, Zou J, Mariano PS, Dunaway-Mariano D, Herzberg O. Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily. Biochemistry. 2008 ;47(1):167-82.
2007
Thompson LC, Ladner JE, Codreanu SG, Harp J, Gilliland GL, Armstrong RN. 2-Hydroxychromene-2-carboxylic acid isomerase: a kappa class glutathione transferase from Pseudomonas putida. Biochemistry. 2007 ;46(23):6710-22.
He Y, Chen Y, Rozak DA, Bryan PN, Orban J. An artificially evolved albumin binding module facilitates chemical shift epitope mapping of GA domain interactions with phylogenetically diverse albumins. Protein Sci. 2007 ;16(7):1490-4.
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. The design and characterization of two proteins with 88% sequence identity but different structure and function. Proc Natl Acad Sci U S A. 2007 ;104(29):11963-8.
Lin H, Lan X, Liao H, Parsley TB, Nuss DL, Chen B. Genome sequence, full-length infectious cDNA clone, and mapping of viral double-stranded RNA accumulation determinant of hypovirus CHV1-EP721. J Virol. 2007 ;81(4):1813-20.
Sari N, He Y, Doseeva V, Surabian K, Ramprakash J, Schwarz FP, Herzberg O, Orban J. Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae. Protein Sci. 2007 ;16(5):977-82.
Fialcowitz-White EJ, Brewer BY, Ballin JD, Willis CD, Toth EA, Wilson GM. Specific protein domains mediate cooperative assembly of HuR oligomers on AU-rich mRNA-destabilizing sequences. J Biol Chem. 2007 ;282(29):20948-59.
Chao KL, Muthukumar L, Herzberg O. Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis. Biochemistry. 2007 ;46(23):6911-20.
2006
Fernández MM, Guan R, Swaminathan CP, Malchiodi EL, Mariuzza RA. Crystal structure of staphylococcal enterotoxin I (SEI) in complex with a human major histocompatibility complex class II molecule. J Biol Chem. 2006 ;281(35):25356-64.
2005
Arensburger P, Kim Y-J, Orsetti J, Aluvihare C, O'Brochta DA, Atkinson PW. An active transposable element, Herves, from the African malaria mosquito Anopheles gambiae. Genetics. 2005 ;169(2):697-708.
Teplyakov A, Liu S, Lu Z, Howard A, Dunaway-Mariano D, Herzberg O. Crystal structure of the petal death protein from carnation flower. Biochemistry. 2005 ;44(50):16377-84.
Liu S, Lu Z, Han Y, Melamud E, Dunaway-Mariano D, Herzberg O. Crystal structures of 2-methylisocitrate lyase in complex with product and with isocitrate inhibitor provide insight into lyase substrate specificity, catalysis and evolution. Biochemistry. 2005 ;44(8):2949-62.
Yampolsky LY, Stoltzfus A. The exchangeability of amino acids in proteins. Genetics. 2005 ;170(4):1459-72.