IBBR Publications

Found 63 results
Filters: Keyword is Peptide Fragments  [Clear All Filters]
2015
Lemkul JA, Huang J, Mackerell AD. Induced Dipole-Dipole Interactions Influence the Unfolding Pathways of Wild-Type and Mutant Amyloid β-Peptides. J Phys Chem B. 2015 ;119(51):15574-82.
Cheung CSF, Anderson KW, Wang M, Turko IV. Natural flanking sequences for peptides included in a quantification concatamer internal standard. Anal Chem. 2015 ;87(2):1097-102.
2012
Hawse WF, Champion MM, Joyce MV, Hellman LM, Hossain M, Ryan V, Pierce BG, Weng Z, Baker BM. Cutting edge: Evidence for a dynamically driven T cell signaling mechanism. J Immunol. 2012 ;188(12):5819-23.
Garnacho C, Serrano D, Muro S. A fibrinogen-derived peptide provides intercellular adhesion molecule-1-specific targeting and intraendothelial transport of polymer nanocarriers in human cell cultures and mice. J Pharmacol Exp Ther. 2012 ;340(3):638-47.
He Y, Chen Y, Alexander PA, Bryan PN, Orban J. Mutational tipping points for switching protein folds and functions. Structure. 2012 ;20(2):283-91.
Yap JL, Cao X, Vanommeslaeghe K, Jung K-Y, Peddaboina C, Wilder PT, Nan A, Mackerell AD, W Smythe R, Fletcher S. Relaxation of the rigid backbone of an oligoamide-foldamer-based α-helix mimetic: identification of potent Bcl-xL inhibitors. Org Biomol Chem. 2012 ;10(15):2928-33.
Liriano MA, Varney KM, Wright NT, Hoffman CL, Toth EA, Ishima R, Weber DJ. Target binding to S100B reduces dynamic properties and increases Ca(2+)-binding affinity for wild type and EF-hand mutant proteins. J Mol Biol. 2012 ;423(3):365-85.
2011
Schiel JE, Lowenthal MS, Phinney KW. Mass spectrometry characterization for chemoenzymatic glycoprotein synthesis. J Mass Spectrom. 2011 ;46(7):649-57.
2010
Ballin JD, Prevas JP, Ross CR, Toth EA, Wilson GM, M Record T. Contributions of the histidine side chain and the N-terminal alpha-amino group to the binding thermodynamics of oligopeptides to nucleic acids as a function of pH. Biochemistry. 2010 ;49(9):2018-30.
Charpentier TH, Thompson LE, Liriano MA, Varney KM, Wilder PT, Pozharski E, Toth EA, Weber DJ. The effects of CapZ peptide (TRTK-12) binding to S100B-Ca2+ as examined by NMR and X-ray crystallography. J Mol Biol. 2010 ;396(5):1227-43.
Li Y, Depontieu FR, Sidney J, Salay TM, Engelhard VH, Hunt DF, Sette A, Topalian SL, Mariuzza RA. Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells. J Mol Biol. 2010 ;399(4):596-603.
2009
Liao W-L, Turko IV. Accumulation of large protein fragments in prematurely senescent ARPE-19 cells. Invest Ophthalmol Vis Sci. 2009 ;50(10):4992-7.
Mast N, Liao W-L, Pikuleva IA, Turko IV. Combined use of mass spectrometry and heterologous expression for identification of membrane-interacting peptides in cytochrome P450 46A1 and NADPH-cytochrome P450 oxidoreductase. Arch Biochem Biophys. 2009 ;483(1):81-9.
Guvench O, Mackerell AD. Computational fragment-based binding site identification by ligand competitive saturation. PLoS Comput Biol. 2009 ;5(7):e1000435.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, Mackerell AD, Toth EA, Weber DJ. Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. Biochemistry. 2009 ;48(26):6202-12.
Battistel MD, Grishaev A, An SSoo A, Castellino FJ, Llinás M. Solution structure and functional characterization of human plasminogen kringle 5. Biochemistry. 2009 ;48(43):10208-19.
2008
Sun Y, Makarava N, Lee C-I, Laksanalamai P, Robb FT, Baskakov IV. Conformational stability of PrP amyloid fibrils controls their smallest possible fragment size. J Mol Biol. 2008 ;376(4):1155-67.
Malashkevich VN, Varney KM, Garrett SC, Wilder PT, Knight D, Charpentier TH, Ramagopal UA, Almo SC, Weber DJ, Bresnick AR. Structure of Ca2+-bound S100A4 and its interaction with peptides derived from nonmuscle myosin-IIA. Biochemistry. 2008 ;47(18):5111-26.
2006
Li Y, Svehla K, Mathy NL, Voss G, Mascola JR, Wyatt R. Characterization of antibody responses elicited by human immunodeficiency virus type 1 primary isolate trimeric and monomeric envelope glycoproteins in selected adjuvants. J Virol. 2006 ;80(3):1414-26.
2005
Markowitz J, Rustandi RR, Varney KM, Wilder PT, Udan R, Wu SLing, Horrocks WDeW, Weber DJ. Calcium-binding properties of wild-type and EF-hand mutants of S100B in the presence and absence of a peptide derived from the C-terminal negative regulatory domain of p53. Biochemistry. 2005 ;44(19):7305-14.
Kontaxis G, Delaglio F, Bax A. Molecular fragment replacement approach to protein structure determination by chemical shift and dipolar homology database mining. Methods Enzymol. 2005 ;394:42-78.
Ramachandran S, Tseng Y, Y Yu B. Repeated rapid shear-responsiveness of peptide hydrogels with tunable shear modulus. Biomacromolecules. 2005 ;6(3):1316-21.
Zimmer DB, Chaplin J, Baldwin A, Rast M. S100-mediated signal transduction in the nervous system and neurological diseases. Cell Mol Biol (Noisy-le-grand). 2005 ;51(2):201-14.
Kumar S, Roychowdhury A, Ember B, Wang Q, Guan R, Mariuzza RA, Boons G-J. Selective recognition of synthetic lysine and meso-diaminopimelic acid-type peptidoglycan fragments by human peptidoglycan recognition proteins I{alpha} and S. J Biol Chem. 2005 ;280(44):37005-12.
Wu Z, Delaglio F, Wyatt K, Wistow G, Bax A. Solution structure of (gamma)S-crystallin by molecular fragment replacement NMR. Protein Sci. 2005 ;14(12):3101-14.