IBBR Publications

Found 25 results
Filters: Keyword is Oligonucleotide Array Sequence Analysis  [Clear All Filters]
2015
Ben-Yoav H, Dykstra PH, Bentley WE, Ghodssi R. A controlled microfluidic electrochemical lab-on-a-chip for label-free diffusion-restricted DNA hybridization analysis. Biosens Bioelectron. 2015 ;64:579-85.
2012
Ben-Yoav H, Dykstra PH, Bentley WE, Ghodssi R. A microfluidic-based electrochemical biochip for label-free diffusion-restricted DNA hybridization analysis. Biosens Bioelectron. 2012 ;38(1):114-20.
2008
Bruno RD, Gover TD, Burger AM, Brodie AM, Njar VCO. 17alpha-Hydroxylase/17,20 lyase inhibitor VN/124-1 inhibits growth of androgen-independent prostate cancer cells via induction of the endoplasmic reticulum stress response. Mol Cancer Ther. 2008 ;7(9):2828-36.
Pal S, Wu J, Wu LP. Microarray analyses reveal distinct roles for Rel proteins in the Drosophila immune response. Dev Comp Immunol. 2008 ;32(1):50-60.
Jang H-J, Nde C, Toghrol F, Bentley WE. Microarray analysis of toxicogenomic effects of ortho-phenylphenol in Staphylococcus aureus. BMC Genomics. 2008 ;9:411.
Nde CW, Jang H-J, Toghrol F, Bentley WE. Toxicogenomic response of Pseudomonas aeruginosa to ortho-phenylphenol. BMC Genomics. 2008 ;9:473.
2007
Small DA, Chang W, Toghrol F, Bentley WE. Comparative global transcription analysis of sodium hypochlorite, peracetic acid, and hydrogen peroxide on Pseudomonas aeruginosa. Appl Microbiol Biotechnol. 2007 ;76(5):1093-105.
Pal S, St Leger RJ, Wu LP. Fungal peptide Destruxin A plays a specific role in suppressing the innate immune response in Drosophila melanogaster. J Biol Chem. 2007 ;282(12):8969-77.
Deng F, Allen TD, Nuss DL. Ste12 transcription factor homologue CpST12 is down-regulated by hypovirus infection and required for virulence and female fertility of the chestnut blight fungus Cryphonectria parasitica. Eukaryot Cell. 2007 ;6(2):235-44.
Yi H, Rubloff GW, Culver JN. TMV microarrays: hybridization-based assembly of DNA-programmed viral nanotemplates. Langmuir. 2007 ;23(5):2663-7.
Small DA, Chang W, Toghrol F, Bentley WE. Toxicogenomic analysis of sodium hypochlorite antimicrobial mechanisms in Pseudomonas aeruginosa. Appl Microbiol Biotechnol. 2007 ;74(1):176-85.
2006
Chang W, Small DA, Toghrol F, Bentley WE. Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide. J Bacteriol. 2006 ;188(4):1648-59.
Chang W, Toghrol F, Bentley WE. Toxicogenomic response of Staphylococcus aureus to peracetic acid. Environ Sci Technol. 2006 ;40(16):5124-31.
2005
Wang L, Li J, March JC, Valdes JJ, Bentley WE. luxS-dependent gene regulation in Escherichia coli K-12 revealed by genomic expression profiling. J Bacteriol. 2005 ;187(24):8350-60.
Chang W, Small DA, Toghrol F, Bentley WE. Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide. BMC Genomics. 2005 ;6:115.
Chang W, Small DA, Toghrol F, Bentley WE. Microarray analysis of toxicogenomic effects of peracetic acid on Pseudomonas aeruginosa. Environ Sci Technol. 2005 ;39(15):5893-9.
2004
Allen TD, Nuss DL. Linkage between mitochondrial hypovirulence and viral hypovirulence in the chestnut blight fungus revealed by cDNA microarray analysis. Eukaryot Cell. 2004 ;3(5):1227-32.
Dawe AL, Segers GC, Allen TD, McMains VC, Nuss DL. Microarray analysis of Cryphonectria parasitica Galpha- and Gbetagamma-signalling pathways reveals extensive modulation by hypovirus infection. Microbiology. 2004 ;150(Pt 12):4033-43.
Yi H, Wu L-Q, Ghodssi R, Rubloff GW, Payne GF, Bentley WE. A robust technique for assembly of nucleic acid hybridization chips based on electrochemically templated chitosan. Anal Chem. 2004 ;76(2):365-72.
Allen TD, Nuss DL. Specific and common alterations in host gene transcript accumulation following infection of the chestnut blight fungus by mild and severe hypoviruses. J Virol. 2004 ;78(8):4145-55.
2003
Wu C-F, Valdes JJ, Bentley WE, Sekowski JW. DNA microarray for discrimination between pathogenic 0157:H7 EDL933 and non-pathogenic Escherichia coli strains. Biosens Bioelectron. 2003 ;19(1):1-8.
Golem S, Culver JN. Tobacco mosaic virus induced alterations in the gene expression profile of Arabidopsis thaliana. Mol Plant Microbe Interact. 2003 ;16(8):681-8.
Allen TD, Dawe AL, Nuss DL. Use of cDNA microarrays to monitor transcriptional responses of the chestnut blight fungus Cryphonectria parasitica to infection by virulence-attenuating hypoviruses. Eukaryot Cell. 2003 ;2(6):1253-65.
2001
DeLisa MP, Wu CF, Wang L, Valdes JJ, Bentley WE. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. J Bacteriol. 2001 ;183(18):5239-47.
Gill RT, DeLisa MP, Valdes JJ, Bentley WE. Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield. Biotechnol Bioeng. 2001 ;72(1):85-95.