IBBR Publications

Found 56 results
Filters: Keyword is Transcription, Genetic  [Clear All Filters]
2012
Wang X, Culver JN. DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus. BMC Plant Biol. 2012 ;12:157.
2011
Stagno JR, Altieri AS, Bubunenko M, Tarasov SG, Li J, Court DL, R Byrd A, Ji X. Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination. Nucleic Acids Res. 2011 ;39(17):7803-15.
2010
Lin J, Yang Q, Wilder PT, Carrier F, Weber DJ. The calcium-binding protein S100B down-regulates p53 and apoptosis in malignant melanoma. J Biol Chem. 2010 ;285(35):27487-98.
Cerchietti LC, Ghetu AF, Zhu X, Da Silva GF, Zhong S, Matthews M, Bunting KL, Polo JM, Farès C, Arrowsmith CH, et al. A small-molecule inhibitor of BCL6 kills DLBCL cells in vitro and in vivo. Cancer Cell. 2010 ;17(4):400-11.
2009
Nde CW, Jang H-J, Toghrol F, Bentley WE. Global transcriptomic response of Pseudomonas aeruginosa to chlorhexidine diacetate. Environ Sci Technol. 2009 ;43(21):8406-15.
Melamud E, Moult J. Stochastic noise in splicing machinery. Nucleic Acids Res. 2009 ;37(14):4873-86.
2008
Wang W, Yang X, Tangchaiburana S, Ndeh R, Markham JE, Tsegaye Y, Dunn TM, Wang G-L, Bellizzi M, Parsons JF, et al. An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis. Plant Cell. 2008 ;20(11):3163-79.
Shang J, Wu X, Lan X, Fan Y, Dong H, Deng Y, Nuss DL, Chen B. Large-scale expressed sequence tag analysis for the chestnut blight fungus Cryphonectria parasitica. Fungal Genet Biol. 2008 ;45(3):319-27.
Jang H-J, Chang MWook, Toghrol F, Bentley WE. Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus. Appl Microbiol Biotechnol. 2008 ;78(4):695-707.
Purushottamachar P, Khandelwal A, Vasaitis TS, Bruno RD, Gediya LK, Njar VCO. Potent anti-prostate cancer agents derived from a novel androgen receptor down-regulating agent. Bioorg Med Chem. 2008 ;16(7):3519-29.
Das R, Loss S, Li J, Waugh DS, Tarasov S, Wingfield PT, R Byrd A, Altieri AS. Structural biophysics of the NusB:NusE antitermination complex. J Mol Biol. 2008 ;376(3):705-20.
Nde CW, Jang H-J, Toghrol F, Bentley WE. Toxicogenomic response of Pseudomonas aeruginosa to ortho-phenylphenol. BMC Genomics. 2008 ;9:473.
2007
March JC, Bentley WE. Methods for gene silencing with RNAi. Methods Mol Biol. 2007 ;388:427-34.
Deng F, Allen TD, Nuss DL. Ste12 transcription factor homologue CpST12 is down-regulated by hypovirus infection and required for virulence and female fertility of the chestnut blight fungus Cryphonectria parasitica. Eukaryot Cell. 2007 ;6(2):235-44.
2006
Chang W, Small DA, Toghrol F, Bentley WE. Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide. J Bacteriol. 2006 ;188(4):1648-59.
Chang W, Toghrol F, Bentley WE. Toxicogenomic response of Staphylococcus aureus to peracetic acid. Environ Sci Technol. 2006 ;40(16):5124-31.
2005
Xiao S, Calis O, Patrick E, Zhang G, Charoenwattana P, Muskett P, Parker JE, Turner JG. The atypical resistance gene, RPW8, recruits components of basal defence for powdery mildew resistance in Arabidopsis. Plant J. 2005 ;42(1):95-110.
Lim K, Doseeva V, Demirkan ESarikaya, Pullalarevu S, Krajewski W, Galkin A, Howard A, Herzberg O. Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation. Proteins. 2005 ;58(3):759-63.
Nuss DL. Hypovirulence: mycoviruses at the fungal-plant interface. Nat Rev Microbiol. 2005 ;3(8):632-42.
Chang W, Small DA, Toghrol F, Bentley WE. Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide. BMC Genomics. 2005 ;6:115.
Chang W, Small DA, Toghrol F, Bentley WE. Microarray analysis of toxicogenomic effects of peracetic acid on Pseudomonas aeruginosa. Environ Sci Technol. 2005 ;39(15):5893-9.
Handratta VD, Vasaitis TS, Njar VCO, Gediya LK, Kataria R, Chopra P, Newman D, Farquhar R, Guo Z, Qiu Y, et al. Novel C-17-heteroaryl steroidal CYP17 inhibitors/antiandrogens: synthesis, in vitro biological activity, pharmacokinetics, and antitumor activity in the LAPC4 human prostate cancer xenograft model. J Med Chem. 2005 ;48(8):2972-84.
2004
Segers GC, Regier JC, Nuss DL. Evidence for a role of the regulator of G-protein signaling protein CPRGS-1 in Galpha subunit CPG-1-mediated regulation of fungal virulence, conidiation, and hydrophobin synthesis in the chestnut blight fungus Cryphonectria parasitica. Eukaryot Cell. 2004 ;3(6):1454-63.
Dawe AL, Segers GC, Allen TD, McMains VC, Nuss DL. Microarray analysis of Cryphonectria parasitica Galpha- and Gbetagamma-signalling pathways reveals extensive modulation by hypovirus infection. Microbiology. 2004 ;150(Pt 12):4033-43.
Allen TD, Nuss DL. Specific and common alterations in host gene transcript accumulation following infection of the chestnut blight fungus by mild and severe hypoviruses. J Virol. 2004 ;78(8):4145-55.