IBBR Publications

Found 24 results
Filters: Keyword is Genetic Variation  [Clear All Filters]
2015
Sant'Anna FH, Lebedinsky AV, Sokolova TG, Robb FT, Gonzalez JM. Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity. BMC Genomics. 2015 ;16:757.
2014
Pancera M, Zhou T, Druz A, Georgiev IS, Soto C, Gorman J, Huang J, Acharya P, Chuang G-Y, Ofek GA, et al. Structure and immune recognition of trimeric pre-fusion HIV-1 Env. Nature. 2014 ;514(7523):455-61.
2012
Sundling C, Li Y, Huynh N, Poulsen C, Wilson R, O'Dell S, Feng Y, Mascola JR, Wyatt RT, Hedestam GBKarlsson. High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site. Sci Transl Med. 2012 ;4(142):142ra96.
Yu G, Stoltzfus A. Population diversity of ORFan genes in Escherichia coli. Genome Biol Evol. 2012 ;4(11):1176-87.
2009
Stoltzfus A, Yampolsky LY. Climbing mount probable: mutation as a cause of nonrandomness in evolution. J Hered. 2009 ;100(5):637-47.
2007
Sponseller BA, Sparks WO, Wannemuehler Y, Li Y, Antons AK, J Oaks L, Carpenter S. Immune selection of equine infectious anemia virus env variants during the long-term inapparent stage of disease. Virology. 2007 ;363(1):156-65.
Orgil U, Araki H, Tangchaiburana S, Berkey R, Xiao S. Intraspecific genetic variations, fitness cost and benefit of RPW8, a disease resistance locus in Arabidopsis thaliana. Genetics. 2007 ;176(4):2317-33.
Chao KL, Muthukumar L, Herzberg O. Structure of human hyaluronidase-1, a hyaluronan hydrolyzing enzyme involved in tumor growth and angiogenesis. Biochemistry. 2007 ;46(23):6911-20.
2006
Stoltzfus A. Mutationism and the dual causation of evolutionary change. Evol Dev. 2006 ;8(3):304-17.
2005
Yampolsky LY, Stoltzfus A. The exchangeability of amino acids in proteins. Genetics. 2005 ;170(4):1459-72.
Yampolsky LY, Stoltzfus A. Untangling the effects of codon mutation and amino acid exchangeability. Pac Symp Biocomput. 2005 :433-44.
2003
Baccam P, Thompson RJ, Li Y, Sparks WO, Belshan M, Dorman KS, Wannemuehler Y, J Oaks L, Cornette JL, Carpenter S. Subpopulations of equine infectious anemia virus Rev coexist in vivo and differ in phenotype. J Virol. 2003 ;77(22):12122-31.
2002
Dimasi N, Sawicki MW, Reineck LA, Li Y, Natarajan K, Margulies DH, Mariuzza RA. Crystal structure of the Ly49I natural killer cell receptor reveals variability in dimerization mode within the Ly49 family. J Mol Biol. 2002 ;320(3):573-85.
Holt RA, G Subramanian M, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JMC, Wides R, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science. 2002 ;298(5591):129-49.
2001
Yampolsky LY, Stoltzfus A. Bias in the introduction of variation as an orienting factor in evolution. Evol Dev. 2001 ;3(2):73-83.
Dawe AL, Nuss DL. Hypoviruses and chestnut blight: exploiting viruses to understand and modulate fungal pathogenesis. Annu Rev Genet. 2001 ;35:1-29.
Regier JC, Mitter C, Friedlander TP, Peigler RS. Re: Phylogenetic relationships in Sphingidae (Insecta: Lepidoptera): initial evidence from two nuclear genes. Mol Phylogenet Evol. 2001 ;20(2):311-6.
1999
Yang L, Yoon KJ, Li Y, Lee JH, Zimmerman JJ, Frey ML, Harmon KM, Platt KB. Antigenic and genetic variations of the 15 kD nucleocapsid protein of porcine reproductive and respiratory syndrome virus isolates. Arch Virol. 1999 ;144(3):525-46.
1996
Pechik I, Ji X, Fidelis K, Karavitis M, Moult J, Brinigar WS, Fronticelli C, Gilliland GL. Crystallographic, molecular modeling, and biophysical characterization of the valine beta 67 (E11)-->threonine variant of hemoglobin. Biochemistry. 1996 ;35(6):1935-45.
Zimmer DB, Chessher J, Song W. Nucleotide homologies in genes encoding members of the S100 protein family. Biochim Biophys Acta. 1996 ;1313(3):229-38.
1991
Hillman BI, Anzola JV, Halpern BT, Cavileer TD, Nuss DL. First field isolation of wound tumor virus from a plant host: minimal sequence divergence from the type strain isolated from an insect vector. Virology. 1991 ;185(2):896-900.
1988
Stoltzfus A, Leslie JF, Milkman R. Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB. Genetics. 1988 ;120(2):345-58.
1986
Bryan PN, Rollence ML, Pantoliano MW, Wood J, Finzel BC, Gilliland GL, Howard AJ, Poulos TL. Proteases of enhanced stability: characterization of a thermostable variant of subtilisin. Proteins. 1986 ;1(4):326-34.
1984
Nuss DL, Summers D. Variant dsRNAs associated with transmission-defective isolates of wound tumor virus represent terminally conserved remnants of genome segments. Virology. 1984 ;133(2):276-88.