IBBR Publications

S Hasan S, Cramer WA. Internal lipid architecture of the hetero-oligomeric cytochrome b6f complex. Structure. 2014 ;22(7):1008-15.

E Raman P, Mackerell AD. Rapid estimation of hydration thermodynamics of macromolecular regions. J Chem Phys. 2013 ;139(5):055105.

Grishaev A, Guo L, Irving T, Bax A. Improved fitting of solution X-ray scattering data to macromolecular structures and structural ensembles by explicit water modeling. J Am Chem Soc. 2010 ;132(44):15484-6.

Wu H-C, Shi X-W, Tsao C-Y, Lewandowski AT, Fernandes R, Hung C-W, DeShong P, Kobatake E, Valdes JJ, Payne GF, et al. Biofabrication of antibodies and antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag. Biotechnol Bioeng. 2009 ;103(2):231-40.

Markowitz J, Rustandi RR, Varney KM, Wilder PT, Udan R, Wu SLing, Horrocks WDeW, Weber DJ. Calcium-binding properties of wild-type and EF-hand mutants of S100B in the presence and absence of a peptide derived from the C-terminal negative regulatory domain of p53. Biochemistry. 2005 ;44(19):7305-14.

Galkin A, Lu X, Dunaway-Mariano D, Herzberg O. Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase. J Biol Chem. 2005 ;280(40):34080-7.

Mintseris J, Wiehe K, Pierce BG, Anderson R, Chen R, Janin J, Weng Z. Protein-Protein Docking Benchmark 2.0: an update. Proteins. 2005 ;60(2):214-6.

Dam J, Velikovsky CA, Mariuzza RA, Urbanke C, Schuck P. Sedimentation velocity analysis of heterogeneous protein-protein interactions: Lamm equation modeling and sedimentation coefficient distributions c(s). Biophys J. 2005 ;89(1):619-34.

Wiehe K, Pierce BG, Mintseris J, Tong WWei, Anderson R, Chen R, Weng Z. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins. 2005 ;60(2):207-13.

Mackerell AD. Empirical force fields for biological macromolecules: overview and issues. J Comput Chem. 2004 ;25(13):1584-604.

Vistica J, Dam J, Balbo A, Yikilmaz E, Mariuzza RA, Rouault TA, Schuck P. Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition. Anal Biochem. 2004 ;326(2):234-56.

Janin J, Henrick K, Moult J, Eyck LTen, Sternberg MJE, Vajda S, Vakser I, Wodak SJ. CAPRI: a Critical Assessment of PRedicted Interactions. Proteins. 2003 ;52(1):2-9.

Li Y, Urrutia M, Smith-Gill SJ, Mariuzza RA. Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen. Biochemistry. 2003 ;42(1):11-22.

Lehmann C, Lim K, Chalamasetty VRao, Krajewski W, Melamud E, Galkin A, Howard A, Kelman Z, Reddy PT, Murzin AG, et al. The HI0073/HI0074 protein pair from Haemophilus influenzae is a member of a new nucleotidyltransferase family: structure, sequence analyses, and solution studies. Proteins. 2003 ;50(2):249-60.

Luy B, Marino JP. JE-TROSY: combined J- and TROSY-spectroscopy for the measurement of one-bond couplings in macromolecules. J Magn Reson. 2003 ;163(1):92-8.

Gaponenko V, Altieri AS, Li J, R Byrd A. Breaking symmetry in the structure determination of (large) symmetric protein dimers. J Biomol NMR. 2002 ;24(2):143-8.

Andersen PS, Schuck P, Sundberg EJ, Geisler C, Karjalainen K, Mariuzza RA. Quantifying the energetics of cooperativity in a ternary protein complex. Biochemistry. 2002 ;41(16):5177-84.

Natarajan K, Dimasi N, Wang J, Mariuzza RA, Margulies DH. Structure and function of natural killer cell receptors: multiple molecular solutions to self, nonself discrimination. Annu Rev Immunol. 2002 ;20:853-85.

Sawicki MW, Dimasi N, Natarajan K, Wang J, Margulies DH, Mariuzza RA. Structural basis of MHC class I recognition by natural killer cell receptors. Immunol Rev. 2001 ;181:52-65.

Chen CC, Herzberg O. Structures of the acyl-enzyme complexes of the Staphylococcus aureus beta-lactamase mutant Glu166Asp:Asn170Gln with benzylpenicillin and cephaloridine. Biochemistry. 2001 ;40(8):2351-8.

Rubinson KA, Ladner JE, Tordova M, Gilliland GL. Cryosalts: suppression of ice formation in macromolecular crystallography. Acta Crystallogr D Biol Crystallogr. 2000 ;56(Pt 8):996-1001.

Tormo J, Natarajan K, Margulies DH, Mariuzza RA. Crystal structure of a lectin-like natural killer cell receptor bound to its MHC class I ligand. Nature. 1999 ;402(6762):623-31.

Turner J, Hingorani MM, Kelman Z, O'Donnell M. The internal workings of a DNA polymerase clamp-loading machine. EMBO J. 1999 ;18(3):771-83.

Andersen PS, Lavoie PM, Sékaly RP, Churchill H, Kranz DM, Schlievert PM, Karjalainen K, Mariuzza RA. Role of the T cell receptor alpha chain in stabilizing TCR-superantigen-MHC class II complexes. Immunity. 1999 ;10(4):473-83.

Li H, Llera A, Malchiodi EL, Mariuzza RA. The structural basis of T cell activation by superantigens. Annu Rev Immunol. 1999 ;17:435-66.