Publications

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RETRACTED: Dahal et al. PERK Is Critical for Alphavirus Nonstructural Protein Translation. Viruses 2021, 13, 892.
Dahal B, Lehman CW, Akhrymuk I, Bracci NR, Panny L, Barrera MD, Bhalla N, Jacobs JL, Dinman JD, Kehn-Hall K. 2025. RETRACTED: Dahal et al. PERK Is Critical for Alphavirus Nonstructural Protein Translation. <i>Viruses</i> 2021, <i>13</i>, 892. Viruses 17(3): . DOI: 10.3390/v17030318
Potent and Selective Human Constitutive Androstane Receptor Activator DL5055 Facilitates Cyclophosphamide-Based Chemotherapies.
Liang D, Li L, Ai Y, Li Z, Hedrich WD, Sakamuru S, Lynch C, Yu W, Watts-Ouattara I, Heyward S, et al. 2025. Potent and Selective Human Constitutive Androstane Receptor Activator DL5055 Facilitates Cyclophosphamide-Based Chemotherapies. Journal of medicinal chemistry : . DOI: 10.1021/acs.jmedchem.4c02064
Plasticity of the mammalian integrated stress response.
Chen CW, Papadopoli D, Szkop KJ, Guan BJ, Alzahrani M, Wu J, Jobava R, Asraf MM, Krokowski D, Vourekas A, et al. 2025. Plasticity of the mammalian integrated stress response. Nature 641(8065): 1319-1328. DOI: 10.1038/s41586-025-08794-6
Mapping the Distribution and Affinities of Ligand Interaction Sites on Human Serum Albumin.
Orr AA, Uwakweh AO, Li X, Karanji AK, Hoag SW, Deredge DJ, MacKerell AD. 2025. Mapping the Distribution and Affinities of Ligand Interaction Sites on Human Serum Albumin. Biophysical journal : . DOI: 10.1016/j.bpj.2025.03.016
Evolving concepts of the protein universe.
Kulkarni P, Porter L, Chou TF, Chong S, Chiti F, Schafer JW, Mohanty A, Ramisetty S, Onuchic JN, Tuite M, et al. 2025. Evolving concepts of the protein universe. iScience 28(3): 112012. DOI: 10.1016/j.isci.2025.112012
Delivery of protein therapeutics and vaccines using their multivalent complexes with synthetic polyelectrolytes.
Andrianov AK. 2025. Delivery of protein therapeutics and vaccines using their multivalent complexes with synthetic polyelectrolytes. Progress in molecular biology and translational science 212: 235-259. DOI: 10.1016/bs.pmbts.2024.04.005
3D nanoprinting of PDMS microvessels with tailored tortuosity and microporosity via direct laser writing.
Xu X, Qiu Y, Chen CY, Carton M, Campbell PMR, Chowdhury AM, Bandyopadhyay BC, Bentley WE, Smith BR, Sochol RD. 2025. 3D nanoprinting of PDMS microvessels with tailored tortuosity and microporosity <i>via</i> direct laser writing. Lab on a chip : . DOI: 10.1039/d4lc01051e
Unveiling the cold reality of metamorphic proteins.
LiWang A, Orban J. 2025. Unveiling the cold reality of metamorphic proteins. Proceedings of the National Academy of Sciences of the United States of America 122(12): e2422725122. DOI: 10.1073/pnas.2422725122
Sleep Health and White Matter Integrity in the UK Biobank.
Petri R, Holub F, Schiel JE, Feige B, Rutter MK, Tamm S, Riemann D, Kyle SD, Spiegelhalder K. 2025. Sleep Health and White Matter Integrity in the UK Biobank. Journal of sleep research : e70034. DOI: 10.1111/jsr.70034
Genomic characterization of the HER2-enriched intrinsic molecular subtype in primary ER-positive HER2-negative breast cancer.
Hohmann L, Sigurjonsdottir K, Campos AB, Nacer DF, Veerla S, Rosengren F, Reddy PT, Häkkinen J, Nordborg N, Vallon-Christersson J, et al. 2025. Genomic characterization of the HER2-enriched intrinsic molecular subtype in primary ER-positive HER2-negative breast cancer. Nature communications 16(1): 2208. DOI: 10.1038/s41467-025-57419-z
Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).
Loughran G, Andreev DE, Terenin IM, Namy O, Mikl M, Yordanova MM, McManus CJ, Firth AE, Atkins JF, Fraser CS, et al. 2025. Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR). Nature structural & molecular biology 32(3): 418-430. DOI: 10.1038/s41594-025-01492-x
Increasing the Accuracy and Robustness of the CHARMM General Force Field with an Expanded Training Set.
Croitoru A, Kumar A, Lambry JC, Lee J, Sharif S, Yu W, MacKerell AD, Aleksandrov A. 2025. Increasing the Accuracy and Robustness of the CHARMM General Force Field with an Expanded Training Set. Journal of chemical theory and computation : . DOI: 10.1021/acs.jctc.5c00046
Investigating the Interaction between Excipients and Monoclonal Antibodies PGT121 and N49P9.6-FR-LS: A Comprehensive Analysis.
Li X, Orr AA, Sajadi MM, DeVico AL, Deredge DJ, MacKerell AD, Hoag SW. 2025. Investigating the Interaction between Excipients and Monoclonal Antibodies PGT121 and N49P9.6-FR-LS: A Comprehensive Analysis. Molecular pharmaceutics : . DOI: 10.1021/acs.molpharmaceut.4c00973
Thermal proteome profiling and proteome analysis using high-definition mass spectrometry demonstrate modulation of cholesterol biosynthesis by next-generation galeterone analog VNPP433-3β in castration-resistant prostate cancer.
Thankan RS, Thomas E, Weldemariam MM, Purushottamachar P, Huang W, Kane MA, Zhang Y, Ambulos N, Wang BD, Weber D, et al. 2025. Thermal proteome profiling and proteome analysis using high-definition mass spectrometry demonstrate modulation of cholesterol biosynthesis by next-generation galeterone analog VNPP433-3β in castration-resistant prostate cancer. Molecular oncology : . DOI: 10.1002/1878-0261.70009
RNA Helicase DDX3 Interacts with the Capsid Protein of Hepatitis E Virus and Plays a Vital Role in the Viral Replication.
Lin S, Sallapalli BT, Chang P, He J, Coyaud E, Pierce BG, Zhang YJ. 2025. RNA Helicase DDX3 Interacts with the Capsid Protein of Hepatitis E Virus and Plays a Vital Role in the Viral Replication. Pathogens (Basel, Switzerland) 14(2): . DOI: 10.3390/pathogens14020177