Publications

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Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons.
Lin J, Pozharski E, Wilson MA. 2017. Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons. Biochemistry 56(2): 391-402. DOI: 10.1021/acs.biochem.6b00906
Mathematical model of LsrR-binding and derepression in Escherichia coli K12.
Graff SM, Bentley WE. 2017. Mathematical model of LsrR-binding and derepression in Escherichia coli K12. Journal of bioinformatics and computational biology 15(1): 1650039. DOI: 10.1142/S0219720016500396
Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression.
Hauk P, Stephens K, Mckay R, Virgile CR, Ueda H, Ostermeier M, Ryu KS, Sintim HO, Bentley WE. 2016. Insightful directed evolution of Escherichia coli quorum sensing promoter region of the lsrACDBFG operon: a tool for synthetic biology systems and protein expression. Nucleic acids research 44(21): 10515-10525.
Cellular aspartyl proteases promote the unconventional secretion of biologically active HIV-1 matrix protein p17.
Caccuri F, Iaria ML, Campilongo F, Varney K, Rossi A, Mitola S, Schiarea S, Bugatti A, Mazzuca P, Giagulli C, et al. 2016. Cellular aspartyl proteases promote the unconventional secretion of biologically active HIV-1 matrix protein p17. Scientific reports 6: 38027. DOI: 10.1038/srep38027
The Expanding Role of the BCL6 Oncoprotein as a Cancer Therapeutic Target.
Cardenas MG, Oswald E, Yu W, Xue F, MacKerell AD, Melnick AM. 2017. The Expanding Role of the BCL6 Oncoprotein as a Cancer Therapeutic Target. Clinical cancer research : an official journal of the American Association for Cancer Research 23(4): 885-893. DOI: 10.1158/1078-0432.CCR-16-2071
Computer-Aided Drug Design Methods.
Yu W, MacKerell AD. 2017. Computer-Aided Drug Design Methods. Methods in molecular biology (Clifton, N.J.) 1520: 85-106. DOI: 10.1007/978-1-4939-6634-9_5
Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.
Ying J, Delaglio F, Torchia DA, Bax A. 2017. Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data. Journal of biomolecular NMR 68(2): 101-118. DOI: 10.1007/s10858-016-0072-7
Homologues of the RPW8 Resistance Protein Are Localized to the Extrahaustorial Membrane that Is Likely Synthesized De Novo.
Berkey R, Zhang Y, Ma X, King H, Zhang Q, Wang W, Xiao S. 2017. Homologues of the RPW8 Resistance Protein Are Localized to the Extrahaustorial Membrane that Is Likely Synthesized De Novo. Plant physiology 173(1): 600-613. DOI: 10.1104/pp.16.01539
Using a Redox Modality to Connect Synthetic Biology to Electronics: Hydrogel-Based Chemo-Electro Signal Transduction for Molecular Communication.
Liu Y, Tsao CY, Kim E, Tschirhart T, Terrell JL, Bentley WE, Payne GF. 2017. Using a Redox Modality to Connect Synthetic Biology to Electronics: Hydrogel-Based Chemo-Electro Signal Transduction for Molecular Communication. Advanced healthcare materials 6(1): . DOI: 10.1002/adhm.201600908
A Facile Two-Step Enzymatic Approach for Conjugating Proteins to Polysaccharide Chitosan at an Electrode Interface.
Bhokisham N, Liu Y, Pakhchanian H, Payne GF, Bentley WE. 2017. A Facile Two-Step Enzymatic Approach for Conjugating Proteins to Polysaccharide Chitosan at an Electrode Interface. Cellular and molecular bioengineering 10(1): 134-142. DOI: 10.1007/s12195-016-0472-5
Fluorescence Resonance Energy Transfer (FRET)-Based Analysis of Lipoplexes.
Pozharski E. 2017. Fluorescence Resonance Energy Transfer (FRET)-Based Analysis of Lipoplexes. Methods in molecular biology (Clifton, N.J.) 1522: 251-256.
Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes.
Pozharski E. 2017. Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes. Methods in molecular biology (Clifton, N.J.) 1522: 237-243.
Kinetic and thermodynamic studies of the interaction between activating and inhibitory Ly49 natural killer receptors and MHC class I molecules.
Romasanta PN, Curto LM, Sarratea MB, Noli Truant S, Antonoglou MB, Fernández Lynch MJ, Delfino JM, Mariuzza RA, Fernández MM, Malchiodi EL. 2017. Kinetic and thermodynamic studies of the interaction between activating and inhibitory Ly49 natural killer receptors and MHC class I molecules. The Biochemical journal 474(1): 179-194. DOI: 10.1042/BCJ20160876
An HIV-1 Env-Antibody Complex Focuses Antibody Responses to Conserved Neutralizing Epitopes.
Chen Y, Wilson R, O'Dell S, Guenaga J, Feng Y, Tran K, Chiang CI, Arendt HE, DeStefano J, Mascola JR, et al. 2016. An HIV-1 Env-Antibody Complex Focuses Antibody Responses to Conserved Neutralizing Epitopes. Journal of immunology (Baltimore, Md. : 1950) 197(10): 3982-3998.
Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase.
Pidugu LS, Flowers JW, Coey CT, Pozharski E, Greenberg MM, Drohat AC. 2016. Structural Basis for Excision of 5-Formylcytosine by Thymine DNA Glycosylase. Biochemistry 55(45): 6205-6208.