Publications

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De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds.
Shen Y, Bryan PN, He Y, Orban J, Baker D, Bax A. 2010. De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds. Protein science : a publication of the Protein Society 19(2): 349-56. DOI: 10.1002/pro.303
Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates.
Douagi I, Forsell MN, Sundling C, O'Dell S, Feng Y, Dosenovic P, Li Y, Seder R, Loré K, Mascola JR, et al. 2010. Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates. Journal of virology 84(4): 1683-95. DOI: 10.1128/JVI.01896-09
Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions.
Fabris D, Marino JP, Le Grice SF. 2009. Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions. Viruses 1(3): 657-77. DOI: 10.3390/v1030657
A cantilever sensor with an integrated optical readout for detection of enzymatically produced homocysteine.
Koev ST, Fernandes R, Bentley WE, Ghodssi R. 2009. A cantilever sensor with an integrated optical readout for detection of enzymatically produced homocysteine. IEEE transactions on biomedical circuits and systems 3(6): 415-23. DOI: 10.1109/TBCAS.2009.2026634
Structure and hydration of membranes embedded with voltage-sensing domains.
Krepkiy D, Mihailescu M, Freites JA, Schow EV, Worcester DL, Gawrisch K, Tobias DJ, White SH, Swartz KJ. 2009. Structure and hydration of membranes embedded with voltage-sensing domains. Nature 462(7272): 473-9. DOI: 10.1038/nature08542
Global transcriptomic response of Pseudomonas aeruginosa to chlorhexidine diacetate.
Nde CW, Jang HJ, Toghrol F, Bentley WE. 2009. Global transcriptomic response of Pseudomonas aeruginosa to chlorhexidine diacetate. Environmental science & technology 43(21): 8406-15. DOI: 10.1021/es9015475
Microarray analysis of Mycobacterium bovis BCG revealed induction of iron acquisition related genes in response to hydrogen peroxide.
Jang HJ, Nde C, Toghrol F, Bentley WE. 2009. Microarray analysis of Mycobacterium bovis BCG revealed induction of iron acquisition related genes in response to hydrogen peroxide. Environmental science & technology 43(24): 9465-72. DOI: 10.1021/es902255q
A minimal sequence code for switching protein structure and function.
Alexander PA, He Y, Chen Y, Orban J, Bryan PN. 2009. A minimal sequence code for switching protein structure and function. Proceedings of the National Academy of Sciences of the United States of America 106(50): 21149-54. DOI: 10.1073/pnas.0906408106
Alternative mechanisms for coordinating polymerase alpha and MCM helicase.
Lee C, Liachko I, Bouten R, Kelman Z, Tye BK. 2010. Alternative mechanisms for coordinating polymerase alpha and MCM helicase. Molecular and cellular biology 30(2): 423-35. DOI: 10.1128/MCB.01240-09
Quantitative study of Au(III) and Pd(II) ion biosorption on genetically engineered Tobacco mosaic virus.
Lim JS, Kim SM, Lee SY, Stach EA, Culver JN, Harris MT. 2010. Quantitative study of Au(III) and Pd(II) ion biosorption on genetically engineered Tobacco mosaic virus. Journal of colloid and interface science 342(2): 455-61. DOI: 10.1016/j.jcis.2009.10.028
An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies.
Song K, Campbell AJ, Bergonzo C, de Los Santos C, Grollman AP, Simmerling C. 2009. An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies. Journal of chemical theory and computation 5(11): 3105-13. DOI: 10.1021/ct9001575
Chemical shift assignments for human apurinic/apyrimidinic endonuclease 1.
Manvilla BA, Varney KM, Drohat AC. 2010. Chemical shift assignments for human apurinic/apyrimidinic endonuclease 1. Biomolecular NMR assignments 4(1): 5-8. DOI: 10.1007/s12104-009-9196-y
S100A1: Structure, Function, and Therapeutic Potential.
Wright NT, Cannon BR, Zimmer DB, Weber DJ. 2009. S100A1: Structure, Function, and Therapeutic Potential. Current chemical biology 3(2): 138-145.
4-Pregnen-21-ol-3,20-dione-21-(4-bromobenzenesulfonate) (NSC 88915) and related novel steroid derivatives as tyrosyl-DNA phosphodiesterase (Tdp1) inhibitors.
Dexheimer TS, Gediya LK, Stephen AG, Weidlich I, Antony S, Marchand C, Interthal H, Nicklaus M, Fisher RJ, Njar VC, et al. 2009. 4-Pregnen-21-ol-3,20-dione-21-(4-bromobenzenesulfonate) (NSC 88915) and related novel steroid derivatives as tyrosyl-DNA phosphodiesterase (Tdp1) inhibitors. Journal of medicinal chemistry 52(22): 7122-31. DOI: 10.1021/jm901061s
Quieting cross talk--the quorum sensing regulator LsrR as a possible target for fighting bacterial infections.
Byrd CM, Bentley WE. 2009. Quieting cross talk--the quorum sensing regulator LsrR as a possible target for fighting bacterial infections. Cell research 19(11): 1229-30. DOI: 10.1038/cr.2009.122