IBBR Publications

Found 16 results
Filters: Author is Shen, Yang  [Clear All Filters]
2021
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, et al. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Proteins. 2021 .
2017
Shen Y, Roche J, Grishaev A, Bax A. Prediction of nearest neighbor effects on backbone torsion angles and NMR scalar coupling constants in disordered proteins. Protein Sci. 2017 .
2016
Shen Y, Barros M, Vennemann T, D Gallagher T, Yin Y, Linden SB, Heselpoth RD, Spencer DJ, Donovan DM, Moult J, et al. A bacteriophage endolysin that eliminates intracellular streptococci. Elife. 2016 ;5.
Lensink MF, Velankar S, Kryshtafovych A, Huang S-Y, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, et al. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. 2016 .
2015
Schmelcher M, Shen Y, Nelson DC, Eugster MR, Eichenseher F, Hanke DC, Loessner MJ, Dong S, Pritchard DG, Lee JC, et al. Evolutionarily distinct bacteriophage endolysins featuring conserved peptidoglycan cleavage sites protect mice from MRSA infection. J Antimicrob Chemother. 2015 .
2014
Linden SB, Zhang H, Heselpoth RD, Shen Y, Schmelcher M, Eichenseher F, Nelson DC. Biochemical and biophysical characterization of PlyGRCS, a bacteriophage endolysin active against methicillin-resistant Staphylococcus aureus. Appl Microbiol Biotechnol. 2014 .
Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond ASJ, Karaca E, Schmitz C, van Dijk M, Bonvin AMJJ, Eisenstein M, et al. Blind prediction of interfacial water positions in CAPRI. Proteins. 2014 ;82(4):620-32.
2013
Wang M, Shen Y, Turko IV, Nelson DC, Li S. Determining Carbapenemase Activity with (18)O Labeling and Targeted Mass Spectrometry. Anal Chem. 2013 .
Bales PM, Renke EMiljkovic, May SL, Shen Y, Nelson DC. Purification and Characterization of Biofilm-Associated EPS Exopolysaccharides from ESKAPE Organisms and Other Pathogens. PLoS One. 2013 ;8(6):e67950.
Shen Y, Köller T, Kreikemeyer B, Nelson DC. Rapid degradation of Streptococcus pyogenes biofilms by PlyC, a bacteriophage-encoded endolysin. J Antimicrob Chemother. 2013 ;68(8):1818-24.
2012
Zhang J, Shen Y, May SL, Nelson DC, Li S. Ratiometric fluorescence detection of pathogenic bacteria resistant to broad-spectrum β-lactam antibiotics. Angew Chem Int Ed Engl. 2012 ;51(8):1865-8.
McGowan S, Buckle AM, Mitchell MS, Hoopes JT, D Gallagher T, Heselpoth RD, Shen Y, Reboul CF, Law RHP, Fischetti VA, et al. X-ray crystal structure of the streptococcal specific phage lysin PlyC. Proc Natl Acad Sci U S A. 2012 ;109(31):12752-7.
2011
Hsu J, Serrano D, Bhowmick T, Kumar K, Shen Y, Kuo YChia, Garnacho C, Muro S. Enhanced endothelial delivery and biochemical effects of α-galactosidase by ICAM-1-targeted nanocarriers for Fabry disease. J Control Release. 2011 ;149(3):323-31.
2010
Shen Y, Bryan PN, He Y, Orban J, Baker D, Bax A. De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds. Protein Sci. 2010 ;19(2):349-56.
2009
Shen Y, Delaglio F, Cornilescu G, Bax A. TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR. 2009 ;44(4):213-23.
2008
Shen Y, Lange O, Delaglio F, Rossi P, Aramini JM, Liu G, Eletsky A, Wu Y, Singarapu KK, Lemak A, et al. Consistent blind protein structure generation from NMR chemical shift data. Proc Natl Acad Sci U S A. 2008 ;105(12):4685-90.