Publications

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The roles of family B and D DNA polymerases in Thermococcus species 9°N Okazaki fragment maturation.
Greenough L, Kelman Z, Gardner AF. 2015. The roles of family B and D DNA polymerases in Thermococcus species 9°N Okazaki fragment maturation. The Journal of biological chemistry 290(20): 12514-22. DOI: 10.1074/jbc.M115.638130
Plant virus directed fabrication of nanoscale materials and devices.
Culver JN, Brown AD, Zang F, Gnerlich M, Gerasopoulos K, Ghodssi R. 2015. Plant virus directed fabrication of nanoscale materials and devices. Virology 479-480: 200-12. DOI: 10.1016/j.virol.2015.03.008
Quantitative performance of internal standard platforms for absolute protein quantification using multiple reaction monitoring-mass spectrometry.
Scott KB, Turko IV, Phinney KW. 2015. Quantitative performance of internal standard platforms for absolute protein quantification using multiple reaction monitoring-mass spectrometry. Analytical chemistry 87(8): 4429-35. DOI: 10.1021/acs.analchem.5b00331
Multidimensional mapping method using an arrayed sensing system for cross-reactivity screening.
Chocron SE, Weisberger BM, Ben-Yoav H, Winkler TE, Kim E, Kelly DL, Payne GF, Ghodssi R. 2015. Multidimensional mapping method using an arrayed sensing system for cross-reactivity screening. PloS one 10(3): e0116310. DOI: 10.1371/journal.pone.0116310
Water proton NMR-a sensitive probe for solute association.
Feng Y, Taraban MB, Yu YB. 2015. Water proton NMR-a sensitive probe for solute association. Chemical communications (Cambridge, England) 51(31): 6804-7. DOI: 10.1039/c5cc00741k
Dithiol-based modification of poly(dopamine): enabling protein resistance via short-chain ethylene oxide oligomers.
Vaish A, Vanderah DJ, Richter LJ, Dimitriou M, Steffens KL, Walker ML. 2015. Dithiol-based modification of poly(dopamine): enabling protein resistance via short-chain ethylene oxide oligomers. Chemical communications (Cambridge, England) 51(30): 6591-4. DOI: 10.1039/c5cc00299k
Bioreactor process parameter screening utilizing a Plackett-Burman design for a model monoclonal antibody.
Agarabi CD, Schiel JE, Lute SC, Chavez BK, Boyne MT, Brorson KA, Khan M, Read EK. 2015. Bioreactor process parameter screening utilizing a Plackett-Burman design for a model monoclonal antibody. Journal of pharmaceutical sciences 104(6): 1919-1928. DOI: 10.1002/jps.24420
Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling.
Zargar A, Quan DN, Carter KK, Guo M, Sintim HO, Payne GF, Bentley WE. 2015. Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling. mBio 6(2): e00025. DOI: 10.1128/mBio.00025-15
Peptidoglycan recognition protein-peptidoglycan complexes increase monocyte/macrophage activation and enhance the inflammatory response.
De Marzi MC, Todone M, Ganem MB, Wang Q, Mariuzza RA, Fernández MM, Malchiodi EL. 2015. Peptidoglycan recognition protein-peptidoglycan complexes increase monocyte/macrophage activation and enhance the inflammatory response. Immunology 145(3): 429-42. DOI: 10.1111/imm.12460
Increasing the stability of the bacteriophage endolysin PlyC using rationale-based FoldX computational modeling.
Heselpoth RD, Yin Y, Moult J, Nelson DC. 2015. Increasing the stability of the bacteriophage endolysin PlyC using rationale-based FoldX computational modeling. Protein engineering, design & selection : PEDS 28(4): 85-92. DOI: 10.1093/protein/gzv004
Structural basis for penetration of the glycan shield of hepatitis C virus E2 glycoprotein by a broadly neutralizing human antibody.
Li Y, Pierce BG, Wang Q, Keck ZY, Fuerst TR, Foung SK, Mariuzza RA. 2015. Structural basis for penetration of the glycan shield of hepatitis C virus E2 glycoprotein by a broadly neutralizing human antibody. The Journal of biological chemistry 290(16): 10117-25. DOI: 10.1074/jbc.M115.643528
Mapping monoclonal antibody structure by 2D 13C NMR at natural abundance.
Arbogast LW, Brinson RG, Marino JP. 2015. Mapping monoclonal antibody structure by 2D 13C NMR at natural abundance. Analytical chemistry 87(7): 3556-61. DOI: 10.1021/ac504804m
Small-molecule inhibitors of ERK-mediated immediate early gene expression and proliferation of melanoma cells expressing mutated BRaf.
Samadani R, Zhang J, Brophy A, Oashi T, Priyakumar UD, Raman EP, St John FJ, Jung KY, Fletcher S, Pozharski E, et al. 2015. Small-molecule inhibitors of ERK-mediated immediate early gene expression and proliferation of melanoma cells expressing mutated BRaf. The Biochemical journal 467(3): 425-38. DOI: 10.1042/BJ20131571
Mapping functional group free energy patterns at protein occluded sites: nuclear receptors and G-protein coupled receptors.
Lakkaraju SK, Yu W, Raman EP, Hershfeld AV, Fang L, Deshpande DA, MacKerell AD. 2015. Mapping functional group free energy patterns at protein occluded sites: nuclear receptors and G-protein coupled receptors. Journal of chemical information and modeling 55(3): 700-8. DOI: 10.1021/ci500729k
Distal modulation of bacterial cell-cell signalling in a synthetic ecosystem using partitioned microfluidics.
Luo X, Tsao CY, Wu HC, Quan DN, Payne GF, Rubloff GW, Bentley WE. 2015. Distal modulation of bacterial cell-cell signalling in a synthetic ecosystem using partitioned microfluidics. Lab on a chip 15(8): 1842-51. DOI: 10.1039/c5lc00107b