Publications

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HIV-1 Vaccine-elicited Antibodies Reverted to Their Inferred Naive Germline Reveal Associations between Binding Affinity and in vivo Activation.
Dai K, Khan SN, Wang Y, He L, Guenaga J, Ingale J, Sundling C, O'Dell S, McKee K, Phad G, et al. 2016. HIV-1 Vaccine-elicited Antibodies Reverted to Their Inferred Naive Germline Reveal Associations between Binding Affinity and in vivo Activation. Scientific reports 6: 20987. DOI: 10.1038/srep20987
How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire.
Blevins SJ, Pierce BG, Singh NK, Riley TP, Wang Y, Spear TT, Nishimura MI, Weng Z, Baker BM. 2016. How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire. Proceedings of the National Academy of Sciences of the United States of America 113(9): E1276-85. DOI: 10.1073/pnas.1522069113
1H, 13C, and 15N resonance assignments of an enzymatically active domain from the catalytic component (CDTa, residues 216-420) of a binary toxin from Clostridium difficile.
Roth BM, Godoy-Ruiz R, Varney KM, Rustandi RR, Weber DJ. 2016. 1H, 13C, and 15N resonance assignments of an enzymatically active domain from the catalytic component (CDTa, residues 216-420) of a binary toxin from Clostridium difficile. Biomolecular NMR assignments 10(1): 213-7. DOI: 10.1007/s12104-016-9669-8
Precision and robustness of 2D-NMR for structure assessment of filgrastim biosimilars.
Ghasriani H, Hodgson DJ, Brinson RG, McEwen I, Buhse LF, Kozlowski S, Marino JP, Aubin Y, Keire DA. 2016. Precision and robustness of 2D-NMR for structure assessment of filgrastim biosimilars. Nature biotechnology 34(2): 139-41. DOI: 10.1038/nbt.3474
A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone.
Pidugu LS, Mbimba JC, Ahmad M, Pozharski E, Sausville EA, Emadi A, Toth EA. 2016. A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone. BMC structural biology 16: 1. DOI: 10.1186/s12900-016-0052-x
Gene Silencing in Insect Cells Using RNAi.
Wu HC, March JC, Bentley WE. 2016. Gene Silencing in Insect Cells Using RNAi. Methods in molecular biology (Clifton, N.J.) 1350: 469-76. DOI: 10.1007/978-1-4939-3043-2_24
Tubular Bioreactor for Probing Baculovirus Infection and Protein Production.
Wu HC, Hu YC, Bentley WE. 2016. Tubular Bioreactor for Probing Baculovirus Infection and Protein Production. Methods in molecular biology (Clifton, N.J.) 1350: 461-7. DOI: 10.1007/978-1-4939-3043-2_23
Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants.
Wu HC, Cha HJ, Bentley WE. 2016. Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants. Methods in molecular biology (Clifton, N.J.) 1350: 447-59. DOI: 10.1007/978-1-4939-3043-2_22
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, et al. 2016. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 12(1): 1-222. DOI: 10.1080/15548627.2015.1100356
QconCAT: Internal Standard for Protein Quantification.
Scott KB, Turko IV, Phinney KW. 2016. QconCAT: Internal Standard for Protein Quantification. Methods in enzymology 566: 289-303. DOI: 10.1016/bs.mie.2015.09.022
Mapping Protein-Ligand Interactions with Proteolytic Fragmentation, Hydrogen/Deuterium Exchange-Mass Spectrometry.
Gallagher ES, Hudgens JW. 2016. Mapping Protein-Ligand Interactions with Proteolytic Fragmentation, Hydrogen/Deuterium Exchange-Mass Spectrometry. Methods in enzymology 566: 357-404. DOI: 10.1016/bs.mie.2015.08.010
Preface.
Kelman Z. 2016. Preface. Methods in enzymology 566: xv-xvi. DOI: 10.1016/S0076-6879(15)00692-8
Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics.
Brinson RG, Miller JT, Kahn JD, Le Grice SF, Marino JP. 2016. Applying Thymine Isostere 2,4-Difluoro-5-Methylbenzene as a NMR Assignment Tool and Probe of Homopyrimidine/Homopurine Tract Structural Dynamics. Methods in enzymology 566: 89-110. DOI: 10.1016/bs.mie.2015.05.009
Application of Natural Isotopic Abundance ¹H-¹³C- and ¹H-¹⁵N-Correlated Two-Dimensional NMR for Evaluation of the Structure of Protein Therapeutics.
Arbogast LW, Brinson RG, Marino JP. 2016. Application of Natural Isotopic Abundance ¹H-¹³C- and ¹H-¹⁵N-Correlated Two-Dimensional NMR for Evaluation of the Structure of Protein Therapeutics. Methods in enzymology 566: 3-34. DOI: 10.1016/bs.mie.2015.09.037
Hydroxylated Dimeric Naphthoquinones Increase the Generation of Reactive Oxygen Species, Induce Apoptosis of Acute Myeloid Leukemia Cells and Are Not Substrates of the Multidrug Resistance Proteins ABCB1 and ABCG2.
Lapidus RG, Carter-Cooper BA, Sadowska M, Choi EY, Wonodi O, Muvarak N, Natarajan K, Pidugu LS, Jaiswal A, Toth EA, et al. 2016. Hydroxylated Dimeric Naphthoquinones Increase the Generation of Reactive Oxygen Species, Induce Apoptosis of Acute Myeloid Leukemia Cells and Are Not Substrates of the Multidrug Resistance Proteins ABCB1 and ABCG2. Pharmaceuticals (Basel, Switzerland) 9(1): . DOI: 10.3390/ph9010004