Publications

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Novel protein-inhibitor interactions in site 3 of Ca(2+)-bound S100B as discovered by X-ray crystallography.
Cavalier MC, Melville Z, Aligholizadeh E, Raman EP, Yu W, Fang L, Alasady M, Pierce AD, Wilder PT, MacKerell AD, et al. 2016. Novel protein-inhibitor interactions in site 3 of Ca(2+)-bound S100B as discovered by X-ray crystallography. Acta crystallographica. Section D, Structural biology 72(Pt 6): 753-60. DOI: 10.1107/S2059798316005532
Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8.
Soto C, Ofek G, Joyce MG, Zhang B, McKee K, Longo NS, Yang Y, Huang J, Parks R, Eudailey J, et al. 2016. Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8. PloS one 11(6): e0157409. DOI: 10.1371/journal.pone.0157409
Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics.
Bergonzo C, Hall KB, Cheatham TE. 2016. Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics. Journal of chemical theory and computation 12(7): 3382-9. DOI: 10.1021/acs.jctc.6b00173
Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer.
Kulkarni P, Dunker AK, Weninger K, Orban J. 2022. Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer. Asian journal of andrology 18(5): 695-703. DOI: 10.4103/1008-682X.181818
Enhancing Intercellular Coordination: Rewiring Quorum Sensing Networks for Increased Protein Expression through Autonomous Induction.
Zargar A, Quan DN, Bentley WE. 2016. Enhancing Intercellular Coordination: Rewiring Quorum Sensing Networks for Increased Protein Expression through Autonomous Induction. ACS synthetic biology 5(9): 923-8. DOI: 10.1021/acssynbio.5b00261
Hepatitis C virus vaccine candidates inducing protective neutralizing antibodies.
Fauvelle C, Colpitts CC, Keck ZY, Pierce BG, Foung SK, Baumert TF. 2016. Hepatitis C virus vaccine candidates inducing protective neutralizing antibodies. Expert review of vaccines 15(12): 1535-1544.
Paraquat-Melanin Redox-Cycling: Evidence from Electrochemical Reverse Engineering.
Kim E, Leverage WT, Liu Y, Panzella L, Alfieri ML, Napolitano A, Bentley WE, Payne GF. 2016. Paraquat-Melanin Redox-Cycling: Evidence from Electrochemical Reverse Engineering. ACS chemical neuroscience 7(8): 1057-67. DOI: 10.1021/acschemneuro.6b00007
Size and targeting to PECAM vs ICAM control endothelial delivery, internalization and protective effect of multimolecular SOD conjugates.
Shuvaev VV, Muro S, Arguiri E, Khoshnejad M, Tliba S, Christofidou-Solomidou M, Muzykantov VR. 2016. Size and targeting to PECAM vs ICAM control endothelial delivery, internalization and protective effect of multimolecular SOD conjugates. Journal of controlled release : official journal of the Controlled Release Society 234: 115-23. DOI: 10.1016/j.jconrel.2016.05.040
Networking biofabricated systems through molecular communication.
Terrell JL, Payne GF, Bentley WE. 2016. Networking biofabricated systems through molecular communication. Nanomedicine (London, England) 11(12): 1503-6. DOI: 10.2217/nnm-2016-0126
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI.
Moult J, Fidelis K, Kryshtafovych A, Schwede T, Tramontano A. 2016. Critical assessment of methods of protein structure prediction: Progress and new directions in round XI. Proteins 84 Suppl 1: 4-14. DOI: 10.1002/prot.25064
Dual and Opposing Roles of Xanthine Dehydrogenase in Defense-Associated Reactive Oxygen Species Metabolism in Arabidopsis.
Ma X, Wang W, Bittner F, Schmidt N, Berkey R, Zhang L, King H, Zhang Y, Feng J, Wen Y, et al. 2016. Dual and Opposing Roles of Xanthine Dehydrogenase in Defense-Associated Reactive Oxygen Species Metabolism in Arabidopsis. The Plant cell 28(5): 1108-26. DOI: 10.1105/tpc.15.00880
Maturational characteristics of HIV-specific antibodies in viremic individuals.
Meffre E, Louie A, Bannock J, Kim LJ, Ho J, Frear CC, Kardava L, Wang W, Buckner CM, Wang Y, et al. 2022. Maturational characteristics of HIV-specific antibodies in viremic individuals. JCI insight 1(3): .
A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp.
Altieri AS, Ladner JE, Li Z, Robinson H, Sallman ZF, Marino JP, Kelman Z. 2016. A small protein inhibits proliferating cell nuclear antigen by breaking the DNA clamp. Nucleic acids research 44(13): 6232-41. DOI: 10.1093/nar/gkw351
Maintenance of HIV-Specific Memory B-Cell Responses in Elite Controllers Despite Low Viral Burdens.
Buckner CM, Kardava L, Zhang X, Gittens K, Justement JS, Kovacs C, McDermott AB, Li Y, Sajadi MM, Chun TW, et al. 2016. Maintenance of HIV-Specific Memory B-Cell Responses in Elite Controllers Despite Low Viral Burdens. The Journal of infectious diseases 214(3): 390-8. DOI: 10.1093/infdis/jiw163
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, et al. 2016. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment. Proteins 84 Suppl 1: 323-48. DOI: 10.1002/prot.25007