Publications

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Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1.
Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. 2013. Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proceedings of the National Academy of Sciences of the United States of America 110(4): 1333-8. DOI: 10.1073/pnas.1218818110
In vivo screening of S100B inhibitors for melanoma therapy.
Zimmer DB, Lapidus RG, Weber DJ. 2013. In vivo screening of S100B inhibitors for melanoma therapy. Methods in molecular biology (Clifton, N.J.) 963: 303-17. DOI: 10.1007/978-1-62703-230-8_18
Quantifying the cluster of differentiation 4 receptor density on human T lymphocytes using multiple reaction monitoring mass spectrometry.
Wang M, He HJ, Turko IV, Phinney KW, Wang L. 2013. Quantifying the cluster of differentiation 4 receptor density on human T lymphocytes using multiple reaction monitoring mass spectrometry. Analytical chemistry 85(3): 1773-7. DOI: 10.1021/ac3031306
Molecular determinants of HIV-1 NCp7 chaperone activity in maturation of the HIV-1 dimerization initiation site.
Aduri R, Briggs KT, Gorelick RJ, Marino JP. 2013. Molecular determinants of HIV-1 NCp7 chaperone activity in maturation of the HIV-1 dimerization initiation site. Nucleic acids research 41(4): 2565-80. DOI: 10.1093/nar/gks1350
The archaeal DNA replication machinery: past, present and future.
Ishino S, Kelman LM, Kelman Z, Ishino Y. 2013. The archaeal DNA replication machinery: past, present and future. Genes & genetic systems 88(6): 315-9.
Identification and quantification of human DNA repair protein NEIL1 by liquid chromatography/isotope-dilution tandem mass spectrometry.
Reddy PT, Jaruga P, Kirkali G, Tuna G, Nelson BC, Dizdaroglu M. 2013. Identification and quantification of human DNA repair protein NEIL1 by liquid chromatography/isotope-dilution tandem mass spectrometry. Journal of proteome research 12(2): 1049-61. DOI: 10.1021/pr301037t
The modern "3G" age of archaeal molecular biology.
Robb FT, Lowe TM, Kelman Z. 2012. The modern "3G" age of archaeal molecular biology. Frontiers in microbiology 3: 430. DOI: 10.3389/fmicb.2012.00430
Structure-Based Discovery of a Novel Pentamidine-Related Inhibitor of the Calcium-Binding Protein S100B.
McKnight LE, Raman EP, Bezawada P, Kudrimoti S, Wilder PT, Hartman KG, Godoy-Ruiz R, Toth EA, Coop A, Mackerell AD, et al. 2012. Structure-Based Discovery of a Novel Pentamidine-Related Inhibitor of the Calcium-Binding Protein S100B. ACS medicinal chemistry letters 3(12): 975-979.
The evolution of S100B inhibitors for the treatment of malignant melanoma.
Hartman KG, McKnight LE, Liriano MA, Weber DJ. 2013. The evolution of S100B inhibitors for the treatment of malignant melanoma. Future medicinal chemistry 5(1): 97-109. DOI: 10.4155/fmc.12.191
Enhancing biocompatibility of D-oligopeptide hydrogels by negative charges.
Hyland LL, Twomey JD, Vogel S, Hsieh AH, Yu YB. 2013. Enhancing biocompatibility of D-oligopeptide hydrogels by negative charges. Biomacromolecules 14(2): 406-12. DOI: 10.1021/bm301598g
Architecturing hierarchical function layers on self-assembled viral templates as 3D nano-array electrodes for integrated Li-ion microbatteries.
Liu Y, Zhang W, Zhu Y, Luo Y, Xu Y, Brown A, Culver JN, Lundgren CA, Xu K, Wang Y, et al. 2013. Architecturing hierarchical function layers on self-assembled viral templates as 3D nano-array electrodes for integrated Li-ion microbatteries. Nano letters 13(1): 293-300. DOI: 10.1021/nl304104q
Targeting gene expression to the female larval fat body of transgenic Aedes aegypti mosquitoes.
Totten DC, Vuong M, Litvinova OV, Jinwal UK, Gulia-Nuss M, Harrell RA, Beneš H. 2013. Targeting gene expression to the female larval fat body of transgenic Aedes aegypti mosquitoes. Insect molecular biology 22(1): 18-30. DOI: 10.1111/imb.12005
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, et al. 2013. Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. Nucleic acids research 41(Database issue): D171-6. DOI: 10.1093/nar/gks1221
SAXS characterization of genetically engineered tobacco mosaic virus nanorods coated with palladium in the absence of external reducing agents.
Freer AS, Guarnaccio L, Wafford K, Smith J, Steilberg J, Culver JN, Harris MT. 2013. SAXS characterization of genetically engineered tobacco mosaic virus nanorods coated with palladium in the absence of external reducing agents. Journal of colloid and interface science 392: 213-218. DOI: 10.1016/j.jcis.2012.09.072
Structure of extracellular signal-regulated kinase 2 in complex with ATP and ADP.
Zhang J, Shapiro P, Pozharski E. 2012. Structure of extracellular signal-regulated kinase 2 in complex with ATP and ADP. Acta crystallographica. Section F, Structural biology and crystallization communications 68(Pt 12): 1434-9. DOI: 10.1107/S1744309112042972