Publications

Filter Year

Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields.
Bergonzo C, Henriksen NM, Roe DR, Cheatham TE. 2015. Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields. RNA (New York, N.Y.) 21(9): 1578-90. DOI: 10.1261/rna.051102.115
Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR.
He Y, Rangarajan S, Kerzic M, Luo M, Chen Y, Wang Q, Yin Y, Workman CJ, Vignali KM, Vignali DA, et al. 2015. Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR. The Journal of biological chemistry 290(32): 19796-805. DOI: 10.1074/jbc.M115.663799
Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease.
Pal LR, Yu CH, Mount SM, Moult J. 2015. Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease. BMC genomics 16 Suppl 8: S4. DOI: 10.1186/1471-2164-16-S8-S4
Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env.
Kwon YD, Pancera M, Acharya P, Georgiev IS, Crooks ET, Gorman J, Joyce MG, Guttman M, Ma X, Narpala S, et al. 2015. Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. Nature structural & molecular biology 22(7): 522-31. DOI: 10.1038/nsmb.3051
A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells.
Mei Y, Wang Y, Kumari P, Shetty AC, Clark D, Gable T, MacKerell AD, Ma MZ, Weber DJ, Yang AJ, et al. 2015. A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells. Nature communications 6: 7316. DOI: 10.1038/ncomms8316
Lipids in salicylic acid-mediated defense in plants: focusing on the roles of phosphatidic acid and phosphatidylinositol 4-phosphate.
Zhang Q, Xiao S. 2015. Lipids in salicylic acid-mediated defense in plants: focusing on the roles of phosphatidic acid and phosphatidylinositol 4-phosphate. Frontiers in plant science 6: 387. DOI: 10.3389/fpls.2015.00387
A Comprehensive Analysis of Chromoplast Differentiation Reveals Complex Protein Changes Associated with Plastoglobule Biogenesis and Remodeling of Protein Systems in Sweet Orange Flesh.
Zeng Y, Du J, Wang L, Pan Z, Xu Q, Xiao S, Deng X. 2015. A Comprehensive Analysis of Chromoplast Differentiation Reveals Complex Protein Changes Associated with Plastoglobule Biogenesis and Remodeling of Protein Systems in Sweet Orange Flesh. Plant physiology 168(4): 1648-65. DOI: 10.1104/pp.15.00645
Expression, crystallization and X-ray diffraction analysis of a complex between B7-H6, a tumor cell ligand for the natural cytotoxicity receptor NKp30, and an inhibitory antibody.
Xu X, Li Y, Gauthier L, Chen Q, Vivier E, Mariuzza RA. 2015. Expression, crystallization and X-ray diffraction analysis of a complex between B7-H6, a tumor cell ligand for the natural cytotoxicity receptor NKp30, and an inhibitory antibody. Acta crystallographica. Section F, Structural biology communications 71(Pt 6): 697-701. DOI: 10.1107/S2053230X15006755
Comparison of Traditional 2-AB Fluorescence LC-MS/MS and Automated LC-MS for the Comparative Glycan Analysis of Monoclonal Antibodies.
Schiel JE, Rogstad SM, Boyne MT. 2015. Comparison of Traditional 2-AB Fluorescence LC-MS/MS and Automated LC-MS for the Comparative Glycan Analysis of Monoclonal Antibodies. Journal of pharmaceutical sciences 104(8): 2464-72. DOI: 10.1002/jps.24522
Directed assembly of a bacterial quorum.
Servinsky MD, Terrell JL, Tsao CY, Wu HC, Quan DN, Zargar A, Allen PC, Byrd CM, Sund CJ, Bentley WE. 2016. Directed assembly of a bacterial quorum. The ISME journal 10(1): 158-69. DOI: 10.1038/ismej.2015.89
Facile Synthesis of Spirocyclic Lactams from β-Keto Carboxylic Acids.
Yang W, Sun X, Yu W, Rai R, Deschamps JR, Mitchell LA, Jiang C, MacKerell AD, Xue F. 2015. Facile Synthesis of Spirocyclic Lactams from β-Keto Carboxylic Acids. Organic letters 17(12): 3070-3. DOI: 10.1021/acs.orglett.5b01350
Structure-Based Screen Identifies a Potent Small Molecule Inhibitor of Stat5a/b with Therapeutic Potential for Prostate Cancer and Chronic Myeloid Leukemia.
Liao Z, Gu L, Vergalli J, Mariani SA, De Dominici M, Lokareddy RK, Dagvadorj A, Purushottamachar P, McCue PA, Trabulsi E, et al. 2015. Structure-Based Screen Identifies a Potent Small Molecule Inhibitor of Stat5a/b with Therapeutic Potential for Prostate Cancer and Chronic Myeloid Leukemia. Molecular cancer therapeutics 14(8): 1777-93. DOI: 10.1158/1535-7163.MCT-14-0883
A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.
Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, et al. 2015. A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation. PloS one 10(5): e0126420. DOI: 10.1371/journal.pone.0126420
Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.
Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M. 2015. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations. Journal of the American Chemical Society 137(22): 7152-7159. DOI: 10.1021/jacs.5b02474
Structure-activity exploration of a small-molecule Lipid II inhibitor.
Fletcher S, Yu W, Huang J, Kwasny SM, Chauhan J, Opperman TJ, MacKerell AD, de Leeuw E. 2015. Structure-activity exploration of a small-molecule Lipid II inhibitor. Drug design, development and therapy 9: 2383-94. DOI: 10.2147/DDDT.S79504