Publications

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QUANTITY: An Isobaric Tag for Quantitative Glycomics.
Yang S, Wang M, Chen L, Yin B, Song G, Turko IV, Phinney KW, Betenbaugh MJ, Zhang H, Li S. 2015. QUANTITY: An Isobaric Tag for Quantitative Glycomics. Scientific reports 5: 17585. DOI: 10.1038/srep17585
A chimeolysin with extended-spectrum streptococcal host range found by an induced lysis-based rapid screening method.
Yang H, Linden SB, Wang J, Yu J, Nelson DC, Wei H. 2015. A chimeolysin with extended-spectrum streptococcal host range found by an induced lysis-based rapid screening method. Scientific reports 5: 17257. DOI: 10.1038/srep17257
On the Causes of Evolutionary Transition:Transversion Bias.
Stoltzfus A, Norris RW. 2016. On the Causes of Evolutionary Transition:Transversion Bias. Molecular biology and evolution 33(3): 595-602. DOI: 10.1093/molbev/msv274
Preface.
Kelman Z. 2015. Preface. Methods in enzymology 565: xix-xx. DOI: 10.1016/S0076-6879(15)00622-9
Isotopic labeling of proteins in Halobacterium salinarum.
Cleveland TE, Kelman Z. 2015. Isotopic labeling of proteins in Halobacterium salinarum. Methods in enzymology 565: 147-65. DOI: 10.1016/bs.mie.2015.06.002
Protein labeling in Escherichia coli with (2)H, (13)C, and (15)N.
Hoopes JT, Elberson MA, Preston RJ, Reddy PT, Kelman Z. 2015. Protein labeling in Escherichia coli with (2)H, (13)C, and (15)N. Methods in enzymology 565: 27-44. DOI: 10.1016/bs.mie.2015.08.023
Improved Force Field Parameters Lead to a Better Description of RNA Structure.
Bergonzo C, Cheatham TE. 2015. Improved Force Field Parameters Lead to a Better Description of RNA Structure. Journal of chemical theory and computation 11(9): 3969-72. DOI: 10.1021/acs.jctc.5b00444
A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine-DNA glycosylase.
Li H, Endutkin AV, Bergonzo C, Campbell AJ, de los Santos C, Grollman A, Zharkov DO, Simmerling C. 2016. A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine-DNA glycosylase. Nucleic acids research 44(2): 683-94. DOI: 10.1093/nar/gkv1092
Reversible Reprogramming of Circulating Memory T Follicular Helper Cell Function during Chronic HIV Infection.
Cubas R, van Grevenynghe J, Wills S, Kardava L, Santich BH, Buckner CM, Muir R, Tardif V, Nichols C, Procopio F, et al. 2015. Reversible Reprogramming of Circulating Memory T Follicular Helper Cell Function during Chronic HIV Infection. Journal of immunology (Baltimore, Md. : 1950) 195(12): 5625-36. DOI: 10.4049/jimmunol.1501524
Electrochemical Measurement of the β-Galactosidase Reporter from Live Cells: A Comparison to the Miller Assay.
Tschirhart T, Zhou XY, Ueda H, Tsao CY, Kim E, Payne GF, Bentley WE. 2016. Electrochemical Measurement of the β-Galactosidase Reporter from Live Cells: A Comparison to the Miller Assay. ACS synthetic biology 5(1): 28-35. DOI: 10.1021/acssynbio.5b00073
Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions.
Yamniuk AP, Newitt JA, Doyle ML, Arisaka F, Giannetti AM, Hensley P, Myszka DG, Schwarz FP, Thomson JA, Eisenstein E. 2015. Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions. Journal of biomolecular techniques : JBT 26(4): 125-41. DOI: 10.7171/jbt.15-2604-001
Rhesus Macaque B-Cell Responses to an HIV-1 Trimer Vaccine Revealed by Unbiased Longitudinal Repertoire Analysis.
Dai K, He L, Khan SN, O'Dell S, McKee K, Tran K, Li Y, Sundling C, Morris CD, Mascola JR, et al. 2015. Rhesus Macaque B-Cell Responses to an HIV-1 Trimer Vaccine Revealed by Unbiased Longitudinal Repertoire Analysis. mBio 6(6): e01375-15. DOI: 10.1128/mBio.01375-15
Side Chain Conformational Distributions of a Small Protein Derived from Model-Free Analysis of a Large Set of Residual Dipolar Couplings.
Li F, Grishaev A, Ying J, Bax A. 2015. Side Chain Conformational Distributions of a Small Protein Derived from Model-Free Analysis of a Large Set of Residual Dipolar Couplings. Journal of the American Chemical Society 137(46): 14798-811. DOI: 10.1021/jacs.5b10072
The C-terminal region of the non-structural protein 2B from Hepatitis A Virus demonstrates lipid-specific viroporin-like activity.
Shukla A, Dey D, Banerjee K, Nain A, Banerjee M. 2015. The C-terminal region of the non-structural protein 2B from Hepatitis A Virus demonstrates lipid-specific viroporin-like activity. Scientific reports 5: 15884. DOI: 10.1038/srep15884
Functionalizing Soft Matter for Molecular Communication.
Liu Y, Wu HC, Chhuan M, Terrell JL, Tsao CY, Bentley WE, Payne GF. 2015. Functionalizing Soft Matter for Molecular Communication. ACS biomaterials science & engineering 1(5): 320-328.