Publications

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Pathway engineering via quorum sensing and sRNA riboregulators-interconnected networks and controllers.
Carter KK, Valdes JJ, Bentley WE. 2012. Pathway engineering via quorum sensing and sRNA riboregulators-interconnected networks and controllers. Metabolic engineering 14(3): 281-8. DOI: 10.1016/j.ymben.2011.11.006
Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41.
Dennison SM, Sutherland LL, Jaeger FH, Anasti KM, Parks R, Stewart S, Bowman C, Xia SM, Zhang R, Shen X, et al. 2011. Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41. PloS one 6(11): e27824. DOI: 10.1371/journal.pone.0027824
First chemical feature-based pharmacophore modeling of potent retinoidal retinoic acid metabolism blocking agents (RAMBAs): identification of novel RAMBA scaffolds.
Purushottamachar P, Patel JB, Gediya LK, Clement OO, Njar VC. 2012. First chemical feature-based pharmacophore modeling of potent retinoidal retinoic acid metabolism blocking agents (RAMBAs): identification of novel RAMBA scaffolds. European journal of medicinal chemistry 47(1): 412-23. DOI: 10.1016/j.ejmech.2011.11.010
Development of a flow-based ultrafast immunoextraction and reverse displacement immunoassay: analysis of free drug fractions.
Schiel JE, Tong Z, Sakulthaew C, Hage DS. 2011. Development of a flow-based ultrafast immunoextraction and reverse displacement immunoassay: analysis of free drug fractions. Analytical chemistry 83(24): 9384-90. DOI: 10.1021/ac201973v
Developing next generation antimicrobials by intercepting AI-2 mediated quorum sensing.
Roy V, Adams BL, Bentley WE. 2011. Developing next generation antimicrobials by intercepting AI-2 mediated quorum sensing. Enzyme and microbial technology 49(2): 113-23. DOI: 10.1016/j.enzmictec.2011.06.001
New insights into the androgen-targeted therapies and epigenetic therapies in prostate cancer.
Godbole AM, Njar VC. 2011. New insights into the androgen-targeted therapies and epigenetic therapies in prostate cancer. Prostate cancer 2011: 918707. DOI: 10.1155/2011/918707
Apparent instability of crystallographic refinement in the presence of disordered model fragments and upon insufficiently restrained model geometry.
Pozharski E. 2011. Apparent instability of crystallographic refinement in the presence of disordered model fragments and upon insufficiently restrained model geometry. Acta crystallographica. Section D, Biological crystallography 67(Pt 11): 966-72. DOI: 10.1107/S090744491103914X
Coupling electrodeposition with layer-by-layer assembly to address proteins within microfluidic channels.
Wang Y, Liu Y, Cheng Y, Kim E, Rubloff GW, Bentley WE, Payne GF. 2011. Coupling electrodeposition with layer-by-layer assembly to address proteins within microfluidic channels. Advanced materials (Deerfield Beach, Fla.) 23(48): 5817-21. DOI: 10.1002/adma.201103726
Protein characterization of a candidate mechanism SNP for Crohn's disease: the macrophage stimulating protein R689C substitution.
Gorlatova N, Chao K, Pal LR, Araj RH, Galkin A, Turko I, Moult J, Herzberg O. 2011. Protein characterization of a candidate mechanism SNP for Crohn's disease: the macrophage stimulating protein R689C substitution. PloS one 6(11): e27269. DOI: 10.1371/journal.pone.0027269
Solution NMR evidence for symmetry in functionally or crystallographically asymmetric homodimers.
Godoy-Ruiz R, Krejcirikova A, Gallagher DT, Tugarinov V. 2011. Solution NMR evidence for symmetry in functionally or crystallographically asymmetric homodimers. Journal of the American Chemical Society 133(49): 19578-81. DOI: 10.1021/ja206967d
Two Arabidopsis guard cell-preferential MAPK genes, MPK9 and MPK12, function in biotic stress response.
Jammes F, Yang X, Xiao S, Kwak JM. 2011. Two Arabidopsis guard cell-preferential MAPK genes, MPK9 and MPK12, function in biotic stress response. Plant signaling & behavior 6(11): 1875-7. DOI: 10.4161/psb.6.11.17933
Cysteine proteinase SpeB from Streptococcus pyogenes - a potent modifier of immunologically important host and bacterial proteins.
Nelson DC, Garbe J, Collin M. 2011. Cysteine proteinase SpeB from Streptococcus pyogenes - a potent modifier of immunologically important host and bacterial proteins. Biological chemistry 392(12): 1077-88. DOI: 10.1515/BC.2011.208
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction.
Kryshtafovych A, Moult J, Bartual SG, Bazan JF, Berman H, Casteel DE, Christodoulou E, Everett JK, Hausmann J, Heidebrecht T, et al. 2011. Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins 79 Suppl 10: 6-20. DOI: 10.1002/prot.23196
Novel application of cytodetachment technology to the analysis of dental implant surfaces.
Bhatavadekar NB, Hu J, Keys K, Ofek G, Athanasiou KA. 2022. Novel application of cytodetachment technology to the analysis of dental implant surfaces. The International journal of oral & maxillofacial implants 26(5): 985-90.
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, et al. 2011. Community-wide assessment of protein-interface modeling suggests improvements to design methodology. Journal of molecular biology 414(2): 289-302. DOI: 10.1016/j.jmb.2011.09.031