Publications

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Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes.
Ryabov Y, Suh JY, Grishaev A, Clore GM, Schwieters CD. 2009. Using the experimentally determined components of the overall rotational diffusion tensor to restrain molecular shape and size in NMR structure determination of globular proteins and protein-protein complexes. Journal of the American Chemical Society 131(27): 9522-31. DOI: 10.1021/ja902336c
Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen.
Velikovsky CA, Deng L, Tasumi S, Iyer LM, Kerzic MC, Aravind L, Pancer Z, Mariuzza RA. 2009. Structure of a lamprey variable lymphocyte receptor in complex with a protein antigen. Nature structural & molecular biology 16(7): 725-30. DOI: 10.1038/nsmb.1619
SHAMS: combining chemical modification of RNA with mass spectrometry to examine polypurine tract-containing RNA/DNA hybrids.
Turner KB, Yi-Brunozzi HY, Brinson RG, Marino JP, Fabris D, Le Grice SF. 2009. SHAMS: combining chemical modification of RNA with mass spectrometry to examine polypurine tract-containing RNA/DNA hybrids. RNA (New York, N.Y.) 15(8): 1605-13. DOI: 10.1261/rna.1615409
Structural implication of splicing stochastics.
Melamud E, Moult J. 2009. Structural implication of splicing stochastics. Nucleic acids research 37(14): 4862-72. DOI: 10.1093/nar/gkp444
X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia.
Galkin A, Kulakova L, Wu R, Gong M, Dunaway-Mariano D, Herzberg O. 2009. X-ray structure and kinetic properties of ornithine transcarbamoylase from the human parasite Giardia lamblia. Proteins 76(4): 1049-53. DOI: 10.1002/prot.22469
Delivered dose: a drug-centric phenotype for chemotherapy dose individualization.
Yu YB. 2009. Delivered dose: a drug-centric phenotype for chemotherapy dose individualization. Pharmaceutical research 26(8): 1803-6. DOI: 10.1007/s11095-009-9913-3
Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site.
Dey B, Svehla K, Xu L, Wycuff D, Zhou T, Voss G, Phogat A, Chakrabarti BK, Li Y, Shaw G, et al. 2009. Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site. PLoS pathogens 5(5): e1000445. DOI: 10.1371/journal.ppat.1000445
A biochemically active MCM-like helicase in Bacillus cereus.
Samuels M, Gulati G, Shin JH, Opara R, McSweeney E, Sekedat M, Long S, Kelman Z, Jeruzalmi D. 2009. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic acids research 37(13): 4441-52. DOI: 10.1093/nar/gkp376
Symmetry-guided design and fluorous synthesis of a stable and rapidly excreted imaging tracer for (19)F MRI.
Jiang ZX, Liu X, Jeong EK, Yu YB. 2009. Symmetry-guided design and fluorous synthesis of a stable and rapidly excreted imaging tracer for (19)F MRI. Angewandte Chemie (International ed. in English) 48(26): 4755-8. DOI: 10.1002/anie.200901005
Noncompetitive peak decay analysis of drug-protein dissociation by high-performance affinity chromatography.
Chen J, Schiel JE, Hage DS. 2009. Noncompetitive peak decay analysis of drug-protein dissociation by high-performance affinity chromatography. Journal of separation science 32(10): 1632-41. DOI: 10.1002/jssc.200900074
Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Zhong S, Coop A, Pozharski E, MacKerell AD, Toth EA, Weber DJ. 2009. Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography. Biochemistry 48(26): 6202-12. DOI: 10.1021/bi9005754
Dissecting structural transitions in the HIV-1 dimerization initiation site RNA using 2-aminopurine fluorescence.
Lee HW, Briggs KT, Marino JP. 2009. Dissecting structural transitions in the HIV-1 dimerization initiation site RNA using 2-aminopurine fluorescence. Methods (San Diego, Calif.) 49(2): 118-27. DOI: 10.1016/j.ymeth.2009.05.006
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.
Michino M, Abola E, , Brooks CL, Dixon JS, Moult J, Stevens RC. 2009. Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nature reviews. Drug discovery 8(6): 455-63. DOI: 10.1038/nrd2877
Accumulation of large protein fragments in prematurely senescent ARPE-19 cells.
Liao WL, Turko IV. 2009. Accumulation of large protein fragments in prematurely senescent ARPE-19 cells. Investigative ophthalmology & visual science 50(10): 4992-7. DOI: 10.1167/iovs.09-3671
Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B.
Brinson RG, Turner KB, Yi-Brunozzi HY, Le Grice SF, Fabris D, Marino JP. 2009. Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B. Biochemistry 48(29): 6988-97. DOI: 10.1021/bi900357j