Publications

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Structural characterization and AlphaFold modeling of human T cell receptor recognition of NRAS cancer neoantigens.
Wu D, Yin R, Chen G, Ribeiro-Filho HV, Cheung M, Robbins PF, Mariuzza RA, Pierce BG. 2024. Structural characterization and AlphaFold modeling of human T cell receptor recognition of NRAS cancer neoantigens. bioRxiv : the preprint server for biology : . DOI: 10.1101/2024.05.21.595215
Evaluating targeted COVID-19 vaccination strategies with agent-based modeling.
Hladish TJ, Pillai AN, Pearson CAB, Toh KB, Tamayo AC, Stoltzfus A, Longini IM. 2024. Evaluating targeted COVID-19 vaccination strategies with agent-based modeling. PLoS computational biology 20(5): e1012128. DOI: 10.1371/journal.pcbi.1012128
Directly visualizing individual polyorganophosphazenes and their single-chain complexes with proteins.
Hlushko R, Pozharski E, Prabhu VM, Andrianov AK. 2024. Directly visualizing individual polyorganophosphazenes and their single-chain complexes with proteins. Communications materials 5: . DOI: 10.1038/s43246-024-00476-6
Nano-Assembled Polyphosphazene Delivery System Enables Effective Intranasal Immunization with Nipah Virus Subunit Vaccine.
Leyva-Grado VH, Marin A, Hlushko R, Yunus AS, Promeneur D, Luckay A, Lazaro GG, Hamm S, Dimitrov AS, Broder CC, et al. 2024. Nano-Assembled Polyphosphazene Delivery System Enables Effective Intranasal Immunization with Nipah Virus Subunit Vaccine. ACS applied bio materials : . DOI: 10.1021/acsabm.4c00441
Chemoselective Proteomics, Zinc Fingers, and a Zinc(II) Model for H2S Mediated Persulfidation.
Stoltzfus AT, Ballot JG, Vignane T, Li H, Worth MM, Muller L, Siegler MA, Kane MA, Filipovic MR, Goldberg DP, et al. 2024. Chemoselective Proteomics, Zinc Fingers, and a Zinc(II) Model for H2S Mediated Persulfidation. Angewandte Chemie (International ed. in English) : e202401003. DOI: 10.1002/anie.202401003
Hepatitis C Virus E1E2 Structure, Diversity, and Implications for Vaccine Development.
Pierce BG, Felbinger N, Metcalf M, Toth EA, Ofek G, Fuerst TR. 2024. Hepatitis C Virus E1E2 Structure, Diversity, and Implications for Vaccine Development. Viruses 16(5): . DOI: 10.3390/v16050803
Cutting Edge: LAG3 Dimerization Is Required for TCR/CD3 Interaction and Inhibition of Antitumor Immunity.
Adam K, Lipatova Z, Abdul Ghafoor Raja M, Mishra AK, Mariuzza RA, Workman CJ, Vignali DAA. 2024. Cutting Edge: LAG3 Dimerization Is Required for TCR/CD3 Interaction and Inhibition of Antitumor Immunity. Journal of immunology (Baltimore, Md. : 1950) : . DOI: 10.4049/jimmunol.2300673
Proscan: a structure-based proline design web server.
Felbinger N, Ribeiro-Filho HV, Pierce BG. 2024. Proscan: a structure-based proline design web server. Nucleic acids research : . DOI: 10.1093/nar/gkae408
Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans.
Williams WB, Alam SM, Ofek G, Erdmann N, Montefiori DC, Seaman MS, Wagh K, Korber B, Edwards RJ, Mansouri K, et al. 2024. Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans. Cell : . DOI: 10.1016/j.cell.2024.04.033
Pilot study indicates that a gluten-free diet lowers oxidative stress for gluten-sensitive persons with schizophrenia.
Kim E, Redwood S, Liu F, Roche DJO, Chen S, Bentley WE, Eaton WW, Čiháková D, Talor MV, Kelly DL, et al. 2024. Pilot study indicates that a gluten-free diet lowers oxidative stress for gluten-sensitive persons with schizophrenia. Schizophrenia research 269: 71-78. DOI: 10.1016/j.schres.2024.05.001
An important consideration when expressing mAbs in Escherichia coli.
Siegall WB, Lyon RB, Kelman Z. 2024. An important consideration when expressing mAbs in Escherichia coli. Protein expression and purification : 106499. DOI: 10.1016/j.pep.2024.106499
FFParam-v2.0: A Comprehensive Tool for CHARMM Additive and Drude Polarizable Force-Field Parameter Optimization and Validation.
Kumar A, MacKerell AD. 2024. FFParam-v2.0: A Comprehensive Tool for CHARMM Additive and Drude Polarizable Force-Field Parameter Optimization and Validation. The journal of physical chemistry. B : . DOI: 10.1021/acs.jpcb.4c01314
Extremophiles in a changing world.
Cowan DA, Albers SV, Antranikian G, Atomi H, Averhoff B, Basen M, Driessen AJM, Jebbar M, Kelman Z, Kerou M, et al. 2024. Extremophiles in a changing world. Extremophiles : life under extreme conditions 28(2): 26. DOI: 10.1007/s00792-024-01341-7
Redox active plant phenolic, acetosyringone, for electrogenetic signaling.
Zakaria FR, Chen CY, Li J, Wang S, Payne GF, Bentley WE. 2024. Redox active plant phenolic, acetosyringone, for electrogenetic signaling. Scientific reports 14(1): 9666. DOI: 10.1038/s41598-024-60191-7
Identifying and Assessing Putative Allosteric Sites and Modulators for CXCR4 Predicted through Network Modeling and Site Identification by Ligand Competitive Saturation.
Inan T, Flinko R, Lewis GK, MacKerell AD, Kurkcuoglu O. 2024. Identifying and Assessing Putative Allosteric Sites and Modulators for CXCR4 Predicted through Network Modeling and Site Identification by Ligand Competitive Saturation. The journal of physical chemistry. B : . DOI: 10.1021/acs.jpcb.4c00925