Publications

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Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli.
Tsao CY, Hooshangi S, Wu HC, Valdes JJ, Bentley WE. 2010. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. Metabolic engineering 12(3): 291-7. DOI: 10.1016/j.ymben.2010.01.002
The effects of CapZ peptide (TRTK-12) binding to S100B-Ca2+ as examined by NMR and X-ray crystallography.
Charpentier TH, Thompson LE, Liriano MA, Varney KM, Wilder PT, Pozharski E, Toth EA, Weber DJ. 2010. The effects of CapZ peptide (TRTK-12) binding to S100B-Ca2+ as examined by NMR and X-ray crystallography. Journal of molecular biology 396(5): 1227-43. DOI: 10.1016/j.jmb.2009.12.057
A practical implementation of cross-spectrum in protein backbone resonance assignment.
Chen K, Delaglio F, Tjandra N. 2010. A practical implementation of cross-spectrum in protein backbone resonance assignment. Journal of magnetic resonance (San Diego, Calif. : 1997) 203(2): 208-12. DOI: 10.1016/j.jmr.2009.12.018
Biofabrication methods for the patterned assembly and synthesis of viral nanotemplates.
Gerasopoulos K, McCarthy M, Banerjee P, Fan X, Culver JN, Ghodssi R. 2010. Biofabrication methods for the patterned assembly and synthesis of viral nanotemplates. Nanotechnology 21(5): 055304. DOI: 10.1088/0957-4484/21/5/055304
Comprehensive density functional theory study on the mechanism of activation of the nonapeptide hormone oxytocin by metal ions.
Xu X, Yu W, Huang Z, Lin Z. 2010. Comprehensive density functional theory study on the mechanism of activation of the nonapeptide hormone oxytocin by metal ions. The journal of physical chemistry. B 114(3): 1417-23. DOI: 10.1021/jp907436p
In-plane homogeneity and lipid dynamics in tethered bilayer lipid membranes (tBLMs).
Shenoy S, Moldovan R, Fitzpatrick J, Vanderah DJ, Deserno M, Lösche M. 2010. In-plane homogeneity and lipid dynamics in tethered bilayer lipid membranes (tBLMs). Soft matter 2010(6): 1263-1274.
Relationship between antibody 2F5 neutralization of HIV-1 and hydrophobicity of its heavy chain third complementarity-determining region.
Ofek G, McKee K, Yang Y, Yang ZY, Skinner J, Guenaga FJ, Wyatt R, Zwick MB, Nabel GJ, Mascola JR, et al. 2010. Relationship between antibody 2F5 neutralization of HIV-1 and hydrophobicity of its heavy chain third complementarity-determining region. Journal of virology 84(6): 2955-62. DOI: 10.1128/JVI.02257-09
Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer.
Liu Y, Chapagain PP, Gerstman BS. 2010. Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer. The journal of physical chemistry. B 114(2): 796-803. DOI: 10.1021/jp909872a
Cross species quorum quenching using a native AI-2 processing enzyme.
Roy V, Fernandes R, Tsao CY, Bentley WE. 2010. Cross species quorum quenching using a native AI-2 processing enzyme. ACS chemical biology 5(2): 223-32. DOI: 10.1021/cb9002738
In situ generation of pH gradients in microfluidic devices for biofabrication of freestanding, semi-permeable chitosan membranes.
Luo X, Berlin DL, Betz J, Payne GF, Bentley WE, Rubloff GW. 2010. In situ generation of pH gradients in microfluidic devices for biofabrication of freestanding, semi-permeable chitosan membranes. Lab on a chip 10(1): 59-65. DOI: 10.1039/b916548g
Fluorescence resonance energy transfer-based analysis of lipoplexes.
Pozharski E. 2010. Fluorescence resonance energy transfer-based analysis of lipoplexes. Methods in molecular biology (Clifton, N.J.) 606: 393-8. DOI: 10.1007/978-1-60761-447-0_27
Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes.
Pozharski E. 2010. Fluorometric Analysis of Individual Cationic Lipid-DNA Complexes. Methods in molecular biology (Clifton, N.J.) 606: 385-91. DOI: 10.1007/978-1-60761-447-0_26
De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds.
Shen Y, Bryan PN, He Y, Orban J, Baker D, Bax A. 2010. De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds. Protein science : a publication of the Protein Society 19(2): 349-56. DOI: 10.1002/pro.303
Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates.
Douagi I, Forsell MN, Sundling C, O'Dell S, Feng Y, Dosenovic P, Li Y, Seder R, Loré K, Mascola JR, et al. 2010. Influence of novel CD4 binding-defective HIV-1 envelope glycoprotein immunogens on neutralizing antibody and T-cell responses in nonhuman primates. Journal of virology 84(4): 1683-95. DOI: 10.1128/JVI.01896-09
Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions.
Fabris D, Marino JP, Le Grice SF. 2009. Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions. Viruses 1(3): 657-77. DOI: 10.3390/v1030657