Publications

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Evidence for upregulated repair of oxidatively induced DNA damage in human colorectal cancer.
Kirkali G, Keles D, Canda AE, Terzi C, Reddy PT, Jaruga P, Dizdaroglu M, Oktay G. 2011. Evidence for upregulated repair of oxidatively induced DNA damage in human colorectal cancer. DNA repair 10(11): 1114-20. DOI: 10.1016/j.dnarep.2011.08.008
Evaluation of disorder predictions in CASP9.
Monastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A. 2011. Evaluation of disorder predictions in CASP9. Proteins 79 Suppl 10: 107-18. DOI: 10.1002/prot.23161
Enhanced delivery of α-glucosidase for Pompe disease by ICAM-1-targeted nanocarriers: comparative performance of a strategy for three distinct lysosomal storage disorders.
Hsu J, Northrup L, Bhowmick T, Muro S. 2012. Enhanced delivery of α-glucosidase for Pompe disease by ICAM-1-targeted nanocarriers: comparative performance of a strategy for three distinct lysosomal storage disorders. Nanomedicine : nanotechnology, biology, and medicine 8(5): 731-9. DOI: 10.1016/j.nano.2011.08.014
Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex.
Wang XX, Li Y, Yin Y, Mo M, Wang Q, Gao W, Wang L, Mariuzza RA. 2011. Affinity maturation of human CD4 by yeast surface display and crystal structure of a CD4-HLA-DR1 complex. Proceedings of the National Academy of Sciences of the United States of America 108(38): 15960-5. DOI: 10.1073/pnas.1109438108
Cross-reactive HIV-1-neutralizing human monoclonal antibodies identified from a patient with 2F5-like antibodies.
Zhu Z, Qin HR, Chen W, Zhao Q, Shen X, Schutte R, Wang Y, Ofek G, Streaker E, Prabakaran P, et al. 2011. Cross-reactive HIV-1-neutralizing human monoclonal antibodies identified from a patient with 2F5-like antibodies. Journal of virology 85(21): 11401-8. DOI: 10.1128/JVI.05312-11
Cis-trans interactions of cell surface receptors: biological roles and structural basis.
Held W, Mariuzza RA. 2011. Cis-trans interactions of cell surface receptors: biological roles and structural basis. Cellular and molecular life sciences : CMLS 68(21): 3469-78. DOI: 10.1007/s00018-011-0798-z
A quantitative LC-MS/MS method for comparative analysis of capture-antibody affinity toward protein antigens.
Lowenthal MS, Gasca-Aragon H, Schiel JE, Dodder NG, Bunk DM. 2011. A quantitative LC-MS/MS method for comparative analysis of capture-antibody affinity toward protein antigens. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 879(26): 2726-32. DOI: 10.1016/j.jchromb.2011.07.037
Diffusion of small molecules inside a peptide hydrogel.
Feng Y, Lee M, Taraban M, Yu YB. 2011. Diffusion of small molecules inside a peptide hydrogel. Chemical communications (Cambridge, England) 47(37): 10455-7. DOI: 10.1039/c1cc13943f
Energetic preference of 8-oxoG eversion pathways in a DNA glycosylase.
Bergonzo C, Campbell AJ, de los Santos C, Grollman AP, Simmerling C. 2011. Energetic preference of 8-oxoG eversion pathways in a DNA glycosylase. Journal of the American Chemical Society 133(37): 14504-6. DOI: 10.1021/ja205142d
Anti-tumor effects of a novel retinoic acid metabolism blocking agent VN/14-1 in the N-methyl-N-nitrosourea-induced rat mammary carcinoma model and its effects on the uterus.
Goss PE, Qi S, Hu H, Gediya LK, Purushottamachar P, Godbole AM, Njar VC. 2012. Anti-tumor effects of a novel retinoic acid metabolism blocking agent VN/14-1 in the N-methyl-N-nitrosourea-induced rat mammary carcinoma model and its effects on the uterus. Breast cancer research and treatment 133(1): 137-44. DOI: 10.1007/s10549-011-1724-7
Endothelial targeting of antibody-decorated polymeric filomicelles.
Shuvaev VV, Ilies MA, Simone E, Zaitsev S, Kim Y, Cai S, Mahmud A, Dziubla T, Muro S, Discher DE, et al. 2011. Endothelial targeting of antibody-decorated polymeric filomicelles. ACS nano 5(9): 6991-9. DOI: 10.1021/nn2015453
A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans.
Chen Y, Apolinario E, Brachova L, Kelman Z, Li Z, Nikolau BJ, Showman L, Sowers K, Orban J. 2011. A nuclear magnetic resonance based approach to accurate functional annotation of putative enzymes in the methanogen Methanosarcina acetivorans. BMC genomics 12 Suppl 1: S7. DOI: 10.1186/1471-2164-12-S1-S7
Thermococcus kodakarensis encodes three MCM homologs but only one is essential.
Pan M, Santangelo TJ, Li Z, Reeve JN, Kelman Z. 2011. Thermococcus kodakarensis encodes three MCM homologs but only one is essential. Nucleic acids research 39(22): 9671-80. DOI: 10.1093/nar/gkr624
Light-activated ionic gelation of common biopolymers.
Javvaji V, Baradwaj AG, Payne GF, Raghavan SR. 2011. Light-activated ionic gelation of common biopolymers. Langmuir : the ACS journal of surfaces and colloids 27(20): 12591-6. DOI: 10.1021/la201860s
Structural and functional impact of cancer-related missense somatic mutations.
Shi Z, Moult J. 2011. Structural and functional impact of cancer-related missense somatic mutations. Journal of molecular biology 413(2): 495-512. DOI: 10.1016/j.jmb.2011.06.046