Publications

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Acute and chronic shear stress differently regulate endothelial internalization of nanocarriers targeted to platelet-endothelial cell adhesion molecule-1.
Han J, Zern BJ, Shuvaev VV, Davies PF, Muro S, Muzykantov V. 2012. Acute and chronic shear stress differently regulate endothelial internalization of nanocarriers targeted to platelet-endothelial cell adhesion molecule-1. ACS nano 6(10): 8824-36. DOI: 10.1021/nn302687n
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, et al. 2012. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome research 22(9): 1798-812. DOI: 10.1101/gr.139105.112
On the variability of experimental data in macromolecular crystallography.
Pozharski E. 2012. On the variability of experimental data in macromolecular crystallography. Acta crystallographica. Section D, Biological crystallography 68(Pt 9): 1077-87. DOI: 10.1107/S0907444912020100
DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus.
Wang X, Culver JN. 2012. DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus. BMC plant biology 12: 157. DOI: 10.1186/1471-2229-12-157
ABRF-MIRG benchmark study: molecular interactions in a three-component system.
Yamniuk AP, Edavettal SC, Bergqvist S, Yadav SP, Doyle ML, Calabrese K, Parsons JF, Eisenstein E. 2012. ABRF-MIRG benchmark study: molecular interactions in a three-component system. Journal of biomolecular techniques : JBT 23(3): 101-14. DOI: 10.7171/jbt.12-2303-003
15N-labeled full-length apolipoprotein E4 as an internal standard for mass spectrometry quantification of apolipoprotein E isoforms.
Wang M, Chen J, Turko IV. 2012. 15N-labeled full-length apolipoprotein E4 as an internal standard for mass spectrometry quantification of apolipoprotein E isoforms. Analytical chemistry 84(19): 8340-4. DOI: 10.1021/ac3018873
Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by Vα CDR3.
Deng L, Langley RJ, Wang Q, Topalian SL, Mariuzza RA. 2012. Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by Vα CDR3. Proceedings of the National Academy of Sciences of the United States of America 109(37): 14960-5. DOI: 10.1073/pnas.1207186109
How a mismatch repair enzyme balances the needs for efficient lesion processing and minimal action on undamaged DNA.
Drohat AC, Pozharski E, Maiti A. 2012. How a mismatch repair enzyme balances the needs for efficient lesion processing and minimal action on undamaged DNA. Cell cycle (Georgetown, Tex.) 11(18): 3345-6. DOI: 10.4161/cc.21843
Biodistribution and endocytosis of ICAM-1-targeting antibodies versus nanocarriers in the gastrointestinal tract in mice.
Mane V, Muro S. 2012. Biodistribution and endocytosis of ICAM-1-targeting antibodies versus nanocarriers in the gastrointestinal tract in mice. International journal of nanomedicine 7: 4223-37. DOI: 10.2147/IJN.S34105
Gene network homology in prokaryotes using a similarity search approach: queries of quorum sensing signal transduction.
Quan DN, Bentley WE. 2012. Gene network homology in prokaryotes using a similarity search approach: queries of quorum sensing signal transduction. PLoS computational biology 8(8): e1002637. DOI: 10.1371/journal.pcbi.1002637
Contrast-matched small-angle X-ray scattering from a heavy-atom-labeled protein in structure determination: application to a lead-substituted calmodulin-peptide complex.
Grishaev A, Anthis NJ, Clore GM. 2012. Contrast-matched small-angle X-ray scattering from a heavy-atom-labeled protein in structure determination: application to a lead-substituted calmodulin-peptide complex. Journal of the American Chemical Society 134(36): 14686-9. DOI: 10.1021/ja306359z
Mass spectrometry quantification of clusterin in the human brain.
Chen J, Wang M, Turko IV. 2012. Mass spectrometry quantification of clusterin in the human brain. Molecular neurodegeneration 7: 41. DOI: 10.1186/1750-1326-7-41
Glucose oxidase-mediated gelation: a simple test to detect glucose in food products.
Liu Y, Javvaji V, Raghavan SR, Bentley WE, Payne GF. 2012. Glucose oxidase-mediated gelation: a simple test to detect glucose in food products. Journal of agricultural and food chemistry 60(36): 8963-7. DOI: 10.1021/jf301376b
Encapsulated fusion protein confers "sense and respond" activity to chitosan-alginate capsules to manipulate bacterial quorum sensing.
Gupta A, Terrell JL, Fernandes R, Dowling MB, Payne GF, Raghavan SR, Bentley WE. 2013. Encapsulated fusion protein confers "sense and respond" activity to chitosan-alginate capsules to manipulate bacterial quorum sensing. Biotechnology and bioengineering 110(2): 552-62. DOI: 10.1002/bit.24711
Some new speculative ideas about the "behavioral homeostasis theory" as to how the simple learned behaviors of habituation and sensitization improve organism survival throughout phylogeny.
Eisenstein EM, Eisenstein DL, Sarma JS, Knapp H, Smith JC. 2012. Some new speculative ideas about the "behavioral homeostasis theory" as to how the simple learned behaviors of habituation and sensitization improve organism survival throughout phylogeny. Communicative & integrative biology 5(3): 233-9. DOI: 10.4161/cib.19480