Publications

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Phosphorylation-induced Conformational Ensemble Switching in an Intrinsically Disordered Cancer/Testis Antigen.
He Y, Chen Y, Mooney SM, Rajagopalan K, Bhargava A, Sacho E, Weninger K, Bryan PN, Kulkarni P, Orban J. 2015. Phosphorylation-induced Conformational Ensemble Switching in an Intrinsically Disordered Cancer/Testis Antigen. The Journal of biological chemistry 290(41): 25090-102. DOI: 10.1074/jbc.M115.658583
Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.
Vreven T, Moal IH, Vangone A, Pierce BG, Kastritis PL, Torchala M, Chaleil R, Jiménez-García B, Bates PA, Fernandez-Recio J, et al. 2015. Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2. Journal of molecular biology 427(19): 3031-41. DOI: 10.1016/j.jmb.2015.07.016
Reconstitution of Functionalized Transmembrane Domains of Receptor Proteins into Biomimetic Membranes.
Scott DR, Silin V, Nanda H. 2015. Reconstitution of Functionalized Transmembrane Domains of Receptor Proteins into Biomimetic Membranes. Langmuir : the ACS journal of surfaces and colloids 31(33): 9115-24. DOI: 10.1021/acs.langmuir.5b01990
Enhanced resistance in Theobroma cacao against oomycete and fungal pathogens by secretion of phosphatidylinositol-3-phosphate-binding proteins.
Helliwell EE, Vega-Arreguín J, Shi Z, Bailey B, Xiao S, Maximova SN, Tyler BM, Guiltinan MJ. 2016. Enhanced resistance in Theobroma cacao against oomycete and fungal pathogens by secretion of phosphatidylinositol-3-phosphate-binding proteins. Plant biotechnology journal 14(3): 875-86. DOI: 10.1111/pbi.12436
Histone H3 Ser57 and Thr58 phosphorylation in the brain of 5XFAD mice.
Anderson KW, Mast N, Pikuleva IA, Turko IV. 2015. Histone H3 Ser57 and Thr58 phosphorylation in the brain of 5XFAD mice. FEBS open bio 5: 550-6. DOI: 10.1016/j.fob.2015.06.009
Galeterone and VNPT55 induce proteasomal degradation of AR/AR-V7, induce significant apoptosis via cytochrome c release and suppress growth of castration resistant prostate cancer xenografts in vivo.
Kwegyir-Afful AK, Ramalingam S, Purushottamachar P, Ramamurthy VP, Njar VC. 2015. Galeterone and VNPT55 induce proteasomal degradation of AR/AR-V7, induce significant apoptosis via cytochrome c release and suppress growth of castration resistant prostate cancer xenografts in vivo. Oncotarget 6(29): 27440-60. DOI: 10.18632/oncotarget.4578
Probing Invisible, Excited Protein States by Non-Uniformly Sampled Pseudo-4D CEST Spectroscopy.
Long D, Delaglio F, Sekhar A, Kay LE. 2015. Probing Invisible, Excited Protein States by Non-Uniformly Sampled Pseudo-4D CEST Spectroscopy. Angewandte Chemie (International ed. in English) 54(36): 10507-11. DOI: 10.1002/anie.201504070
Pre-T-cell receptor binds MHC: Implications for thymocyte signaling and selection.
Yang X, Mariuzza RA. 2015. Pre-T-cell receptor binds MHC: Implications for thymocyte signaling and selection. Proceedings of the National Academy of Sciences of the United States of America 112(27): 8166-7. DOI: 10.1073/pnas.1510127112
Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields.
Bergonzo C, Henriksen NM, Roe DR, Cheatham TE. 2015. Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields. RNA (New York, N.Y.) 21(9): 1578-90. DOI: 10.1261/rna.051102.115
Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR.
He Y, Rangarajan S, Kerzic M, Luo M, Chen Y, Wang Q, Yin Y, Workman CJ, Vignali KM, Vignali DA, et al. 2015. Identification of the Docking Site for CD3 on the T Cell Receptor β Chain by Solution NMR. The Journal of biological chemistry 290(32): 19796-805. DOI: 10.1074/jbc.M115.663799
Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease.
Pal LR, Yu CH, Mount SM, Moult J. 2015. Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease. BMC genomics 16 Suppl 8: S4. DOI: 10.1186/1471-2164-16-S8-S4
Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env.
Kwon YD, Pancera M, Acharya P, Georgiev IS, Crooks ET, Gorman J, Joyce MG, Guttman M, Ma X, Narpala S, et al. 2015. Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. Nature structural & molecular biology 22(7): 522-31. DOI: 10.1038/nsmb.3051
A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells.
Mei Y, Wang Y, Kumari P, Shetty AC, Clark D, Gable T, MacKerell AD, Ma MZ, Weber DJ, Yang AJ, et al. 2015. A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells. Nature communications 6: 7316. DOI: 10.1038/ncomms8316
Lipids in salicylic acid-mediated defense in plants: focusing on the roles of phosphatidic acid and phosphatidylinositol 4-phosphate.
Zhang Q, Xiao S. 2015. Lipids in salicylic acid-mediated defense in plants: focusing on the roles of phosphatidic acid and phosphatidylinositol 4-phosphate. Frontiers in plant science 6: 387. DOI: 10.3389/fpls.2015.00387
A Comprehensive Analysis of Chromoplast Differentiation Reveals Complex Protein Changes Associated with Plastoglobule Biogenesis and Remodeling of Protein Systems in Sweet Orange Flesh.
Zeng Y, Du J, Wang L, Pan Z, Xu Q, Xiao S, Deng X. 2015. A Comprehensive Analysis of Chromoplast Differentiation Reveals Complex Protein Changes Associated with Plastoglobule Biogenesis and Remodeling of Protein Systems in Sweet Orange Flesh. Plant physiology 168(4): 1648-65. DOI: 10.1104/pp.15.00645