Publications

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Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids.
Yu W, Liang L, Lin Z, Ling S, Haranczyk M, Gutowski M. 2009. Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids. Journal of computational chemistry 30(4): 589-600. DOI: 10.1002/jcc.21091
Glycosidic linkage conformation of methyl-alpha-mannopyranoside.
Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. 2008. Glycosidic linkage conformation of methyl-alpha-mannopyranoside. The Journal of chemical physics 129(4): 045102. DOI: 10.1063/1.2958916
Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. 2008. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome biology 9(8): R121. DOI: 10.1186/gb-2008-9-8-r121
Matrix development in self-assembly of articular cartilage.
Ofek G, Revell CM, Hu JC, Allison DD, Grande-Allen KJ, Athanasiou KA. 2008. Matrix development in self-assembly of articular cartilage. PloS one 3(7): e2795. DOI: 10.1371/journal.pone.0002795
Oxygen microscopy by two-photon-excited phosphorescence.
Finikova OS, Lebedev AY, Aprelev A, Troxler T, Gao F, Garnacho C, Muro S, Hochstrasser RM, Vinogradov SA. 2008. Oxygen microscopy by two-photon-excited phosphorescence. Chemphyschem : a European journal of chemical physics and physical chemistry 9(12): 1673-9. DOI: 10.1002/cphc.200800296
Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase.
Costa A, van Duinen G, Medagli B, Chong J, Sakakibara N, Kelman Z, Nair SK, Patwardhan A, Onesti S. 2008. Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase. The EMBO journal 27(16): 2250-8. DOI: 10.1038/emboj.2008.135
S100A1 and calmodulin compete for the same binding site on ryanodine receptor.
Wright NT, Prosser BL, Varney KM, Zimmer DB, Schneider MF, Weber DJ. 2008. S100A1 and calmodulin compete for the same binding site on ryanodine receptor. The Journal of biological chemistry 283(39): 26676-83. DOI: 10.1074/jbc.M804432200
Expression of green fluorescent protein in insect larvae and its application for heterologous protein production.
Cha HJ, Pham MQ, Rao G, Bentley WE. 1997. Expression of green fluorescent protein in insect larvae and its application for heterologous protein production. Biotechnology and bioengineering 56(3): 239-47. DOI: 10.1002/(SICI)1097-0290(19971105)56:3<239::AID-BIT1>3.0.CO;2-K
On-line green fluorescent protein sensor with LED excitation.
Randers-Eichhorn L, Albano CR, Sipior J, Bentley WE, Rao G. 1997. On-line green fluorescent protein sensor with LED excitation. Biotechnology and bioengineering 55(6): 921-6. DOI: 10.1002/(SICI)1097-0290(19970920)55:6<921::AID-BIT9>3.0.CO;2-I
Design optimization for bioMEMS studies of enzyme-controlled metabolic pathways.
Luo X, Larios Berlin D, Buckhout-White S, Bentley WE, Payne GF, Ghodssi R, Rubloff GW. 2008. Design optimization for bioMEMS studies of enzyme-controlled metabolic pathways. Biomedical microdevices 10(6): 899-908. DOI: 10.1007/s10544-008-9204-5
Differential intra-endothelial delivery of polymer nanocarriers targeted to distinct PECAM-1 epitopes.
Garnacho C, Albelda SM, Muzykantov VR, Muro S. 2008. Differential intra-endothelial delivery of polymer nanocarriers targeted to distinct PECAM-1 epitopes. Journal of controlled release : official journal of the Controlled Release Society 130(3): 226-33. DOI: 10.1016/j.jconrel.2008.06.007
Divalent metal ion complexes of S100B in the absence and presence of pentamidine.
Charpentier TH, Wilder PT, Liriano MA, Varney KM, Pozharski E, MacKerell AD, Coop A, Toth EA, Weber DJ. 2008. Divalent metal ion complexes of S100B in the absence and presence of pentamidine. Journal of molecular biology 382(1): 56-73. DOI: 10.1016/j.jmb.2008.06.047
Stochastic modeling of gene positive autoregulation networks involving signal molecules.
Fang X, Bentley WE, Zafiriou E. 2008. Stochastic modeling of gene positive autoregulation networks involving signal molecules. Biophysical journal 95(7): 3137-45. DOI: 10.1529/biophysj.107.127175
Evidence for a predominant role of oxidative damage in germline mutation in mammals.
Stoltzfus A. 2008. Evidence for a predominant role of oxidative damage in germline mutation in mammals. Mutation research 644(1-2): 71-3. DOI: 10.1016/j.mrfmmm.2008.05.003
Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition.
Maiti A, Morgan MT, Pozharski E, Drohat AC. 2008. Crystal structure of human thymine DNA glycosylase bound to DNA elucidates sequence-specific mismatch recognition. Proceedings of the National Academy of Sciences of the United States of America 105(26): 8890-5. DOI: 10.1073/pnas.0711061105