Publications

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Impact of a rapid peptide nucleic acid fluorescence in situ hybridization assay on treatment of Candida infections.
Heil EL, Daniels LM, Long DM, Rodino KG, Weber DJ, Miller MB. 2012. Impact of a rapid peptide nucleic acid fluorescence in situ hybridization assay on treatment of Candida infections. American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists 69(21): 1910-4. DOI: 10.2146/ajhp110604
Hsp70 is a novel posttranscriptional regulator of gene expression that binds and stabilizes selected mRNAs containing AU-rich elements.
Kishor A, Tandukar B, Ly YV, Toth EA, Suarez Y, Brewer G, Wilson GM. 2013. Hsp70 is a novel posttranscriptional regulator of gene expression that binds and stabilizes selected mRNAs containing AU-rich elements. Molecular and cellular biology 33(1): 71-84. DOI: 10.1128/MCB.01275-12
A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes.
Pierce BG, Weng Z. 2013. A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes. Protein science : a publication of the Protein Society 22(1): 35-46. DOI: 10.1002/pro.2181
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.
Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DF, Vos RA. 2012. Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. BMC research notes 5: 574. DOI: 10.1186/1756-0500-5-574
Constructive neutral evolution: exploring evolutionary theory's curious disconnect.
Stoltzfus A. 2012. Constructive neutral evolution: exploring evolutionary theory's curious disconnect. Biology direct 7: 35. DOI: 10.1186/1745-6150-7-35
AI-2 analogs and antibiotics: a synergistic approach to reduce bacterial biofilms.
Roy V, Meyer MT, Smith JA, Gamby S, Sintim HO, Ghodssi R, Bentley WE. 2013. AI-2 analogs and antibiotics: a synergistic approach to reduce bacterial biofilms. Applied microbiology and biotechnology 97(6): 2627-38. DOI: 10.1007/s00253-012-4404-6
Structural basis for self-recognition by autoimmune T-cell receptors.
Yin Y, Li Y, Mariuzza RA. 2012. Structural basis for self-recognition by autoimmune T-cell receptors. Immunological reviews 250(1): 32-48. DOI: 10.1111/imr.12002
A new simple and high-yield synthesis of 5α-dihydrotestosterone (DHT), a potent androgen receptor agonist.
Purushottamachar P, Njar VC. 2012. A new simple and high-yield synthesis of 5α-dihydrotestosterone (DHT), a potent androgen receptor agonist. Steroids 77(14): 1530-4. DOI: 10.1016/j.steroids.2012.09.003
The combination of the histone deacetylase inhibitor vorinostat and synthetic triterpenoids reduces tumorigenesis in mouse models of cancer.
Tran K, Risingsong R, Royce DB, Williams CR, Sporn MB, Pioli PA, Gediya LK, Njar VC, Liby KT. 2013. The combination of the histone deacetylase inhibitor vorinostat and synthetic triterpenoids reduces tumorigenesis in mouse models of cancer. Carcinogenesis 34(1): 199-210. DOI: 10.1093/carcin/bgs319
Avoiding steric congestion in dendrimer growth through proportionate branching: a twist on da Vinci's rule of tree branching.
Yue X, Taraban MB, Hyland LL, Yu YB. 2012. Avoiding steric congestion in dendrimer growth through proportionate branching: a twist on da Vinci's rule of tree branching. The Journal of organic chemistry 77(20): 8879-87. DOI: 10.1021/jo301718y
Population diversity of ORFan genes in Escherichia coli.
Yu G, Stoltzfus A. 2012. Population diversity of ORFan genes in Escherichia coli. Genome biology and evolution 4(11): 1176-87. DOI: 10.1093/gbe/evs081
Sugar-binding proteins from fish: selection of high affinity "lambodies" that recognize biomedically relevant glycans.
Hong X, Ma MZ, Gildersleeve JC, Chowdhury S, Barchi JJ, Mariuzza RA, Murphy MB, Mao L, Pancer Z. 2013. Sugar-binding proteins from fish: selection of high affinity "lambodies" that recognize biomedically relevant glycans. ACS chemical biology 8(1): 152-60. DOI: 10.1021/cb300399s
Somatic Populations of PGT135-137 HIV-1-Neutralizing Antibodies Identified by 454 Pyrosequencing and Bioinformatics.
Zhu J, O'Dell S, Ofek G, Pancera M, Wu X, Zhang B, Zhang Z, , Mullikin JC, Simek M, et al. 2012. Somatic Populations of PGT135-137 HIV-1-Neutralizing Antibodies Identified by 454 Pyrosequencing and Bioinformatics. Frontiers in microbiology 3: 315.
Solution NMR structure of a sheddase inhibitor prodomain from the malarial parasite Plasmodium falciparum.
He Y, Chen Y, Oganesyan N, Ruan B, O'Brochta D, Bryan PN, Orban J. 2012. Solution NMR structure of a sheddase inhibitor prodomain from the malarial parasite Plasmodium falciparum. Proteins 80(12): 2810-7. DOI: 10.1002/prot.24187
Novel structural features of xylanase A1 from Paenibacillus sp. JDR-2.
St John FJ, Preston JF, Pozharski E. 2012. Novel structural features of xylanase A1 from Paenibacillus sp. JDR-2. Journal of structural biology 180(2): 303-11. DOI: 10.1016/j.jsb.2012.09.007