Publications

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Systems approaches to unraveling plant metabolism: identifying biosynthetic genes of secondary metabolic pathways.
Spiering MJ, Kaur B, Parsons JF, Eisenstein E. 2014. Systems approaches to unraveling plant metabolism: identifying biosynthetic genes of secondary metabolic pathways. Methods in molecular biology (Clifton, N.J.) 1083: 253-73. DOI: 10.1007/978-1-62703-661-0_15
Coordination of MYH DNA glycosylase and APE1 endonuclease activities via physical interactions.
Luncsford PJ, Manvilla BA, Patterson DN, Malik SS, Jin J, Hwang BJ, Gunther R, Kalvakolanu S, Lipinski LJ, Yuan W, et al. 2013. Coordination of MYH DNA glycosylase and APE1 endonuclease activities via physical interactions. DNA repair 12(12): 1043-52. DOI: 10.1016/j.dnarep.2013.09.007
Models and methods to evaluate transport of drug delivery systems across cellular barriers.
Ghaffarian R, Muro S. 2013. Models and methods to evaluate transport of drug delivery systems across cellular barriers. Journal of visualized experiments : JoVE (80): e50638. DOI: 10.3791/50638
Redox-capacitor to connect electrochemistry to redox-biology.
Kim E, Leverage WT, Liu Y, White IM, Bentley WE, Payne GF. 2014. Redox-capacitor to connect electrochemistry to redox-biology. The Analyst 139(1): 32-43. DOI: 10.1039/c3an01632c
Blind prediction of interfacial water positions in CAPRI.
Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, et al. 2014. Blind prediction of interfacial water positions in CAPRI. Proteins 82(4): 620-32. DOI: 10.1002/prot.24439
CASP10 results compared to those of previous CASP experiments.
Kryshtafovych A, Fidelis K, Moult J. 2014. CASP10 results compared to those of previous CASP experiments. Proteins 82 Suppl 2: 164-74. DOI: 10.1002/prot.24448
Determining carbapenemase activity with 18O labeling and targeted mass spectrometry.
Wang M, Shen Y, Turko IV, Nelson DC, Li S. 2013. Determining carbapenemase activity with 18O labeling and targeted mass spectrometry. Analytical chemistry 85(22): 11014-9. DOI: 10.1021/ac402627k
Performance of ZDOCK in CAPRI rounds 20-26.
Vreven T, Pierce BG, Hwang H, Weng Z. 2013. Performance of ZDOCK in CAPRI rounds 20-26. Proteins 81(12): 2175-82. DOI: 10.1002/prot.24432
Evolved Quorum sensing regulator, LsrR, for altered switching functions.
Adams BL, Carter KK, Guo M, Wu HC, Tsao CY, Sintim HO, Valdes JJ, Bentley WE. 2014. Evolved Quorum sensing regulator, LsrR, for altered switching functions. ACS synthetic biology 3(4): 210-9. DOI: 10.1021/sb400068z
Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity.
Chen S, Li Y, Depontieu FR, McMiller TL, English AM, Shabanowitz J, Kos F, Sidney J, Sette A, Rosenberg SA, et al. 2013. Structure-based design of altered MHC class II-restricted peptide ligands with heterogeneous immunogenicity. Journal of immunology (Baltimore, Md. : 1950) 191(10): 5097-106. DOI: 10.4049/jimmunol.1300467
Quantification of transferrin in human serum using both QconCAT and synthetic internal standards.
Zimmerman TA, Wang M, Lowenthal MS, Turko IV, Phinney KW. 2013. Quantification of transferrin in human serum using both QconCAT and synthetic internal standards. Analytical chemistry 85(21): 10362-8. DOI: 10.1021/ac402326v
Structure and dynamics of full-length HIV-1 capsid protein in solution.
Deshmukh L, Schwieters CD, Grishaev A, Ghirlando R, Baber JL, Clore GM. 2013. Structure and dynamics of full-length HIV-1 capsid protein in solution. Journal of the American Chemical Society 135(43): 16133-47. DOI: 10.1021/ja406246z
Calcium antagonists: a ready prescription for treating infectious diseases?
Clark KB, Eisenstein EM, Krahl SE. 2013. Calcium antagonists: a ready prescription for treating infectious diseases? Current topics in medicinal chemistry 13(18): 2291-305.
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and two signal-interrupting analogues reveal distinct mechanisms for ligand recognition.
Ha JH, Eo Y, Grishaev A, Guo M, Smith JA, Sintim HO, Kim EH, Cheong HK, Bentley WE, Ryu KS. 2013. Crystal structures of the LsrR proteins complexed with phospho-AI-2 and two signal-interrupting analogues reveal distinct mechanisms for ligand recognition. Journal of the American Chemical Society 135(41): 15526-35. DOI: 10.1021/ja407068v
Effects of desialylation on human α1-acid glycoprotein-ligand interactions.
Huang RY, Hudgens JW. 2013. Effects of desialylation on human α1-acid glycoprotein-ligand interactions. Biochemistry 52(40): 7127-36. DOI: 10.1021/bi4011094