Publications

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High-Resolution Longitudinal Study of HIV-1 Env Vaccine-Elicited B Cell Responses to the Virus Primary Receptor Binding Site Reveals Affinity Maturation and Clonal Persistence.
Wang Y, Sundling C, Wilson R, O'Dell S, Chen Y, Dai K, Phad GE, Zhu J, Xiao Y, Mascola JR, et al. 2016. High-Resolution Longitudinal Study of HIV-1 Env Vaccine-Elicited B Cell Responses to the Virus Primary Receptor Binding Site Reveals Affinity Maturation and Clonal Persistence. Journal of immunology (Baltimore, Md. : 1950) 196(9): 3729-43. DOI: 10.4049/jimmunol.1502543
Real-time monitoring of macromolecular biosensing probe self-assembly and on-chip ELISA using impedimetric microsensors.
Zang F, Gerasopoulos K, Fan XZ, Brown AD, Culver JN, Ghodssi R. 2016. Real-time monitoring of macromolecular biosensing probe self-assembly and on-chip ELISA using impedimetric microsensors. Biosensors & bioelectronics 81: 401-407. DOI: 10.1016/j.bios.2016.03.019
Structure-based design of N-substituted 1-hydroxy-4-sulfamoyl-2-naphthoates as selective inhibitors of the Mcl-1 oncoprotein.
Lanning ME, Yu W, Yap JL, Chauhan J, Chen L, Whiting E, Pidugu LS, Atkinson T, Bailey H, Li W, et al. 2016. Structure-based design of N-substituted 1-hydroxy-4-sulfamoyl-2-naphthoates as selective inhibitors of the Mcl-1 oncoprotein. European journal of medicinal chemistry 113: 273-92. DOI: 10.1016/j.ejmech.2016.02.006
A bacteriophage endolysin that eliminates intracellular streptococci.
Shen Y, Barros M, Vennemann T, Gallagher DT, Yin Y, Linden SB, Heselpoth RD, Spencer DJ, Donovan DM, Moult J, et al. 2016. A bacteriophage endolysin that eliminates intracellular streptococci. eLife 5: . DOI: 10.7554/eLife.13152
Quantitative Characterization of Configurational Space Sampled by HIV-1 Nucleocapsid Using Solution NMR, X-ray Scattering and Protein Engineering.
Deshmukh L, Schwieters CD, Grishaev A, Clore GM. 2016. Quantitative Characterization of Configurational Space Sampled by HIV-1 Nucleocapsid Using Solution NMR, X-ray Scattering and Protein Engineering. Chemphyschem : a European journal of chemical physics and physical chemistry 17(11): 1548-52. DOI: 10.1002/cphc.201600212
Structure of Leishmania donovani coronin coiled coil domain reveals an antiparallel 4 helix bundle with inherent asymmetry.
Nayak AR, Karade SS, Srivastava VK, Rana AK, Gupta CM, Sahasrabuddhe AA, Pratap JV. 2016. Structure of Leishmania donovani coronin coiled coil domain reveals an antiparallel 4 helix bundle with inherent asymmetry. Journal of structural biology 195(1): 129-38. DOI: 10.1016/j.jsb.2016.02.020
HIV-1 Vaccine-elicited Antibodies Reverted to Their Inferred Naive Germline Reveal Associations between Binding Affinity and in vivo Activation.
Dai K, Khan SN, Wang Y, He L, Guenaga J, Ingale J, Sundling C, O'Dell S, McKee K, Phad G, et al. 2016. HIV-1 Vaccine-elicited Antibodies Reverted to Their Inferred Naive Germline Reveal Associations between Binding Affinity and in vivo Activation. Scientific reports 6: 20987. DOI: 10.1038/srep20987
How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire.
Blevins SJ, Pierce BG, Singh NK, Riley TP, Wang Y, Spear TT, Nishimura MI, Weng Z, Baker BM. 2016. How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire. Proceedings of the National Academy of Sciences of the United States of America 113(9): E1276-85. DOI: 10.1073/pnas.1522069113
1H, 13C, and 15N resonance assignments of an enzymatically active domain from the catalytic component (CDTa, residues 216-420) of a binary toxin from Clostridium difficile.
Roth BM, Godoy-Ruiz R, Varney KM, Rustandi RR, Weber DJ. 2016. 1H, 13C, and 15N resonance assignments of an enzymatically active domain from the catalytic component (CDTa, residues 216-420) of a binary toxin from Clostridium difficile. Biomolecular NMR assignments 10(1): 213-7. DOI: 10.1007/s12104-016-9669-8
Precision and robustness of 2D-NMR for structure assessment of filgrastim biosimilars.
Ghasriani H, Hodgson DJ, Brinson RG, McEwen I, Buhse LF, Kozlowski S, Marino JP, Aubin Y, Keire DA. 2016. Precision and robustness of 2D-NMR for structure assessment of filgrastim biosimilars. Nature biotechnology 34(2): 139-41. DOI: 10.1038/nbt.3474
A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone.
Pidugu LS, Mbimba JC, Ahmad M, Pozharski E, Sausville EA, Emadi A, Toth EA. 2016. A direct interaction between NQO1 and a chemotherapeutic dimeric naphthoquinone. BMC structural biology 16: 1. DOI: 10.1186/s12900-016-0052-x
Gene Silencing in Insect Cells Using RNAi.
Wu HC, March JC, Bentley WE. 2016. Gene Silencing in Insect Cells Using RNAi. Methods in molecular biology (Clifton, N.J.) 1350: 469-76. DOI: 10.1007/978-1-4939-3043-2_24
Tubular Bioreactor for Probing Baculovirus Infection and Protein Production.
Wu HC, Hu YC, Bentley WE. 2016. Tubular Bioreactor for Probing Baculovirus Infection and Protein Production. Methods in molecular biology (Clifton, N.J.) 1350: 461-7. DOI: 10.1007/978-1-4939-3043-2_23
Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants.
Wu HC, Cha HJ, Bentley WE. 2016. Evaluating Baculovirus Infection Using Green Fluorescent Protein and Variants. Methods in molecular biology (Clifton, N.J.) 1350: 447-59. DOI: 10.1007/978-1-4939-3043-2_22
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, et al. 2016. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 12(1): 1-222. DOI: 10.1080/15548627.2015.1100356