Publications

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Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data.
Grishaev A, Ying J, Canny MD, Pardi A, Bax A. 2008. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. Journal of biomolecular NMR 42(2): 99-109. DOI: 10.1007/s10858-008-9267-x
Thermoplasma acidophilum Cdc6 protein stimulates MCM helicase activity by regulating its ATPase activity.
Haugland GT, Sakakibara N, Pey AL, Rollor CR, Birkeland NK, Kelman Z. 2008. Thermoplasma acidophilum Cdc6 protein stimulates MCM helicase activity by regulating its ATPase activity. Nucleic acids research 36(17): 5602-9. DOI: 10.1093/nar/gkn548
Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype.
Hebert CG, Valdes JJ, Bentley WE. 2008. Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype. Current opinion in biotechnology 19(5): 500-5. DOI: 10.1016/j.copbio.2008.08.006
Androgen receptor inactivation contributes to antitumor efficacy of 17{alpha}-hydroxylase/17,20-lyase inhibitor 3beta-hydroxy-17-(1H-benzimidazole-1-yl)androsta-5,16-diene in prostate cancer.
Vasaitis T, Belosay A, Schayowitz A, Khandelwal A, Chopra P, Gediya LK, Guo Z, Fang HB, Njar VC, Brodie AM. 2008. Androgen receptor inactivation contributes to antitumor efficacy of 17{alpha}-hydroxylase/17,20-lyase inhibitor 3beta-hydroxy-17-(1H-benzimidazole-1-yl)androsta-5,16-diene in prostate cancer. Molecular cancer therapeutics 7(8): 2348-57. DOI: 10.1158/1535-7163.MCT-08-0230
A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis.
Kim SK, Reddy SK, Nelson BC, Robinson H, Reddy PT, Ladner JE. 2008. A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis. The FEBS journal 275(19): 4824-35. DOI: 10.1111/j.1742-4658.2008.06621.x
Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids.
Yu W, Liang L, Lin Z, Ling S, Haranczyk M, Gutowski M. 2009. Comparison of some representative density functional theory and wave function theory methods for the studies of amino acids. Journal of computational chemistry 30(4): 589-600. DOI: 10.1002/jcc.21091
Glycosidic linkage conformation of methyl-alpha-mannopyranoside.
Coskuner O, Bergeron DE, Rincon L, Hudgens JW, Gonzalez CA. 2008. Glycosidic linkage conformation of methyl-alpha-mannopyranoside. The Journal of chemical physics 129(4): 045102. DOI: 10.1063/1.2958916
Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. 2008. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome biology 9(8): R121. DOI: 10.1186/gb-2008-9-8-r121
Matrix development in self-assembly of articular cartilage.
Ofek G, Revell CM, Hu JC, Allison DD, Grande-Allen KJ, Athanasiou KA. 2008. Matrix development in self-assembly of articular cartilage. PloS one 3(7): e2795. DOI: 10.1371/journal.pone.0002795
Oxygen microscopy by two-photon-excited phosphorescence.
Finikova OS, Lebedev AY, Aprelev A, Troxler T, Gao F, Garnacho C, Muro S, Hochstrasser RM, Vinogradov SA. 2008. Oxygen microscopy by two-photon-excited phosphorescence. Chemphyschem : a European journal of chemical physics and physical chemistry 9(12): 1673-9. DOI: 10.1002/cphc.200800296
Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase.
Costa A, van Duinen G, Medagli B, Chong J, Sakakibara N, Kelman Z, Nair SK, Patwardhan A, Onesti S. 2008. Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase. The EMBO journal 27(16): 2250-8. DOI: 10.1038/emboj.2008.135
S100A1 and calmodulin compete for the same binding site on ryanodine receptor.
Wright NT, Prosser BL, Varney KM, Zimmer DB, Schneider MF, Weber DJ. 2008. S100A1 and calmodulin compete for the same binding site on ryanodine receptor. The Journal of biological chemistry 283(39): 26676-83. DOI: 10.1074/jbc.M804432200
Expression of green fluorescent protein in insect larvae and its application for heterologous protein production.
Cha HJ, Pham MQ, Rao G, Bentley WE. 1997. Expression of green fluorescent protein in insect larvae and its application for heterologous protein production. Biotechnology and bioengineering 56(3): 239-47. DOI: 10.1002/(SICI)1097-0290(19971105)56:3<239::AID-BIT1>3.0.CO;2-K
On-line green fluorescent protein sensor with LED excitation.
Randers-Eichhorn L, Albano CR, Sipior J, Bentley WE, Rao G. 1997. On-line green fluorescent protein sensor with LED excitation. Biotechnology and bioengineering 55(6): 921-6. DOI: 10.1002/(SICI)1097-0290(19970920)55:6<921::AID-BIT9>3.0.CO;2-I
Design optimization for bioMEMS studies of enzyme-controlled metabolic pathways.
Luo X, Larios Berlin D, Buckhout-White S, Bentley WE, Payne GF, Ghodssi R, Rubloff GW. 2008. Design optimization for bioMEMS studies of enzyme-controlled metabolic pathways. Biomedical microdevices 10(6): 899-908. DOI: 10.1007/s10544-008-9204-5