Publications

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Combinations of affinity-enhancing mutations in a T cell receptor reveal highly nonadditive effects within and between complementarity determining regions and chains.
Pierce BG, Haidar JN, Yu Y, Weng Z. 2010. Combinations of affinity-enhancing mutations in a T cell receptor reveal highly nonadditive effects within and between complementarity determining regions and chains. Biochemistry 49(33): 7050-9. DOI: 10.1021/bi901969a
Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1.
Wu X, Yang ZY, Li Y, Hogerkorp CM, Schief WR, Seaman MS, Zhou T, Schmidt SD, Wu L, Xu L, et al. 2010. Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science (New York, N.Y.) 329(5993): 856-61. DOI: 10.1126/science.1187659
A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey.
Deng L, Velikovsky CA, Xu G, Iyer LM, Tasumi S, Kerzic MC, Flajnik MF, Aravind L, Pancer Z, Mariuzza RA. 2010. A structural basis for antigen recognition by the T cell-like lymphocytes of sea lamprey. Proceedings of the National Academy of Sciences of the United States of America 107(30): 13408-13. DOI: 10.1073/pnas.1005475107
Proteins that switch folds.
Bryan PN, Orban J. 2010. Proteins that switch folds. Current opinion in structural biology 20(4): 482-8. DOI: 10.1016/j.sbi.2010.06.002
The calcium-binding protein S100B down-regulates p53 and apoptosis in malignant melanoma.
Lin J, Yang Q, Wilder PT, Carrier F, Weber DJ. 2010. The calcium-binding protein S100B down-regulates p53 and apoptosis in malignant melanoma. The Journal of biological chemistry 285(35): 27487-27498. DOI: 10.1074/jbc.M110.155382
Structure of oxalacetate acetylhydrolase, a virulence factor of the chestnut blight fungus.
Chen C, Sun Q, Narayanan B, Nuss DL, Herzberg O. 2010. Structure of oxalacetate acetylhydrolase, a virulence factor of the chestnut blight fungus. The Journal of biological chemistry 285(34): 26685-96. DOI: 10.1074/jbc.M110.117804
Optimizing the conditions of a multiple reaction monitoring assay for membrane proteins: quantification of cytochrome P450 11A1 and adrenodoxin reductase in bovine adrenal cortex and retina.
Liao WL, Heo GY, Dodder NG, Pikuleva IA, Turko IV. 2010. Optimizing the conditions of a multiple reaction monitoring assay for membrane proteins: quantification of cytochrome P450 11A1 and adrenodoxin reductase in bovine adrenal cortex and retina. Analytical chemistry 82(13): 5760-7. DOI: 10.1021/ac100811x
Structural insights into the evolution of the adaptive immune system: the variable lymphocyte receptors of jawless vertebrates.
Mariuzza RA, Velikovsky CA, Deng L, Xu G, Pancer Z. 2010. Structural insights into the evolution of the adaptive immune system: the variable lymphocyte receptors of jawless vertebrates. Biological chemistry 391(7): 753-60. DOI: 10.1515/BC.2010.091
Effect of temperature during assembly on the structure and mechanical properties of peptide-based materials.
Ramachandran S, Taraban MB, Trewhella J, Gryczynski I, Gryczynski Z, Yu YB. 2010. Effect of temperature during assembly on the structure and mechanical properties of peptide-based materials. Biomacromolecules 11(6): 1502-6. DOI: 10.1021/bm100138m
Evaluation of affinity microcolumns containing human serum albumin for rapid analysis of drug-protein binding.
Yoo MJ, Schiel JE, Hage DS. 2010. Evaluation of affinity microcolumns containing human serum albumin for rapid analysis of drug-protein binding. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 878(20): 1707-13. DOI: 10.1016/j.jchromb.2010.04.028
Phenothiazines inhibit S100A4 function by inducing protein oligomerization.
Malashkevich VN, Dulyaninova NG, Ramagopal UA, Liriano MA, Varney KM, Knight D, Brenowitz M, Weber DJ, Almo SC, Bresnick AR. 2010. Phenothiazines inhibit S100A4 function by inducing protein oligomerization. Proceedings of the National Academy of Sciences of the United States of America 107(19): 8605-10. DOI: 10.1073/pnas.0913660107
Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells.
Li Y, Depontieu FR, Sidney J, Salay TM, Engelhard VH, Hunt DF, Sette A, Topalian SL, Mariuzza RA. 2010. Structural basis for the presentation of tumor-associated MHC class II-restricted phosphopeptides to CD4+ T cells. Journal of molecular biology 399(4): 596-603. DOI: 10.1016/j.jmb.2010.04.037
Helicase ATPase activity of the Tobacco mosaic virus 126-kDa protein modulates replicase complex assembly.
Wang X, Kelman Z, Culver JN. 2010. Helicase ATPase activity of the Tobacco mosaic virus 126-kDa protein modulates replicase complex assembly. Virology 402(2): 292-302. DOI: 10.1016/j.virol.2010.03.019
Structure/function implications in a dynamic complex of the intrinsically disordered Sic1 with the Cdc4 subunit of an SCF ubiquitin ligase.
Mittag T, Marsh J, Grishaev A, Orlicky S, Lin H, Sicheri F, Tyers M, Forman-Kay JD. 2010. Structure/function implications in a dynamic complex of the intrinsically disordered Sic1 with the Cdc4 subunit of an SCF ubiquitin ligase. Structure (London, England : 1993) 18(4): 494-506. DOI: 10.1016/j.str.2010.01.020
Biological nanofactories facilitate spatially selective capture and manipulation of quorum sensing bacteria in a bioMEMS device.
Fernandes R, Luo X, Tsao CY, Payne GF, Ghodssi R, Rubloff GW, Bentley WE. 2010. Biological nanofactories facilitate spatially selective capture and manipulation of quorum sensing bacteria in a bioMEMS device. Lab on a chip 10(9): 1128-34. DOI: 10.1039/b926846d