Publications

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Genetically-Programmed Hypervesiculation of Lactiplantibacillus Plantarum Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model.
Pirolli NH, Levy D, Schledwitz A, Moura NS, Sarkar M, Solomon TJ, Powsner EH, Nowak R, Mamczarz Z, Bridgeman CJ, et al. 2025. Genetically-Programmed Hypervesiculation of Lactiplantibacillus Plantarum Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model. Advanced science (Weinheim, Baden-Wurttemberg, Germany) : e12679. DOI: 10.1002/advs.202512679
The conserved bridging domain on HCV E1E2 glycoprotein complex is targeted by neutralizing antibodies from diverse lineages.
Chen F, Nguyen YTK, Lee YZ, Giang E, Lau SC, Koide Y, Hung SH, Ueno L, He L, Fuerst TR, et al. 2025. The conserved bridging domain on HCV E1E2 glycoprotein complex is targeted by neutralizing antibodies from diverse lineages. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.11.05.686883
Dynamic S-acylation of GSDMA regulates pyroptosis.
Tao Z, Thakare RP, Cheung M, Zhang J, Chen X, Hu X, Pierce BG, Wu X, Mao J. 2025. Dynamic <i>S</i>-acylation of GSDMA regulates pyroptosis. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.10.16.682910
An unconventional HxD motif orchestrates coatomer-dependent coronavirus morphogenesis.
Mohona S, Shakya AK, Singh S, Kearns FL, Jemison K, Erramilli S, Dey D, Qing E, Jennings BC, Doray B, et al. 2025. An unconventional HxD motif orchestrates coatomer-dependent coronavirus morphogenesis. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.10.16.682669
Scrambling Signal Modularity in Bottom-up Assembled Synthetic Pseudomonas Consortia Reveals Robust Information Transfer.
Chu M, VanArsdale E, Muthusamy D, Yung MC, Payne GF, Bentley WE. 2025. Scrambling Signal Modularity in Bottom-up Assembled Synthetic Pseudomonas Consortia Reveals Robust Information Transfer. ACS synthetic biology : . DOI: 10.1021/acssynbio.5c00486
Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J. 2025. Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI. Proteins : . DOI: 10.1002/prot.70076
Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans.
Williams WB, Alam SM, Ofek G, Erdmann N, Montefiori DC, Seaman MS, Wagh K, Korber B, Edwards RJ, Mansouri K, et al. 2025. Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans. Cell : . DOI: 10.1016/j.cell.2025.10.023
Modeling Alternative Conformational States in CASP16.
Dube N, Ramelot TA, Benavides TL, Huang YJ, Moult J, Kryshtafovych A, Montelione GT. 2025. Modeling Alternative Conformational States in CASP16. Proteins : . DOI: 10.1002/prot.70065
Polyphosphazene-Mediated Assembly of TLR4 and TLR7/8 Agonists Enables a Potent Nano-Adjuvant Delivery System for Hepatitis C Virus Vaccine Antigens.
Andrianov AK, Marin A, Jeong S, Kulakova L, Chowdhury A, Hlushko R, Das S, Moy F, Toth EA, Ernst RK, et al. 2025. Polyphosphazene-Mediated Assembly of TLR4 and TLR7/8 Agonists Enables a Potent Nano-Adjuvant Delivery System for Hepatitis C Virus Vaccine Antigens. Vaccines 13(10): . DOI: 10.3390/vaccines13101012
Kinetic investigation of calcium-induced Sorcin aggregation by stopped-flow light scattering.
Ye Q, Carillo KJ, Delaeter N, Zhang L, Jeon J, Liu Y. 2025. Kinetic investigation of calcium-induced Sorcin aggregation by stopped-flow light scattering. The Biochemical journal : . DOI: 10.1042/BCJ20253194
Drude Polarizable Force Field for Phosphorylated Polypeptides and Proteins.
Gil Pineda LI, Miller CJ, MacKerell AD, Lemkul JA. 2025. Drude Polarizable Force Field for Phosphorylated Polypeptides and Proteins. Biophysical journal : . DOI: 10.1016/j.bpj.2025.10.026
Transgene-free genome editing in citrus and poplar trees using positive and negative selection markers.
Rocha DC, Omoregbee MO, Contiliani DF, Mandlik R, Li G, Mascoveto J, Coleman G, Culver JN, Leal DR, de Souza AA, et al. 2025. Transgene-free genome editing in citrus and poplar trees using positive and negative selection markers. Plant cell reports 44(11): 244. DOI: 10.1007/s00299-025-03627-2
Endolysins: targeting Streptococcus pneumoniae in its major anatomical niches of infection and addressing the hurdles.
Castallanos G, Gonzalez-Juarbe N, Nelson DC. 2025. Endolysins: targeting <i>Streptococcus pneumoniae</i> in its major anatomical niches of infection and addressing the hurdles. Frontiers in microbiology 16: 1660791. DOI: 10.3389/fmicb.2025.1660791
Protein Target Highlights in CASP16: Insights From the Structure Providers.
Alexander LT, Follonier OM, Kryshtafovych A, Abesamis K, Bibi-Triki S, Box HG, Breyton C, Bringel F, Carrique L, d'Acapito A, et al. 2025. Protein Target Highlights in CASP16: Insights From the Structure Providers. Proteins : . DOI: 10.1002/prot.70025
Complex regulation of Citron OGD2-dependent resistance to citrus canker caused by Xanthomonas citri subsp. citri.
Hao C, Jin Y, Su H, Luo J, Luo X, Yao M, Song Y, Han J, Liu X, Xu Y, et al. 2025. Complex regulation of Citron OGD2-dependent resistance to citrus canker caused by Xanthomonas citri subsp. citri. The Plant cell 37(10): . DOI: 10.1093/plcell/koaf225