Publications

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Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge.
Kundu K, Pal LR, Yin Y, Moult J. 2017. Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge. Human mutation 38(9): 1201-1216. DOI: 10.1002/humu.23249
Conformational Changes in Active and Inactive States of Human PP2Cα Characterized by Hydrogen/Deuterium Exchange-Mass Spectrometry.
Mazur SJ, Gallagher ES, Debnath S, Durell SR, Anderson KW, Miller Jenkins LM, Appella E, Hudgens JW. 2017. Conformational Changes in Active and Inactive States of Human PP2Cα Characterized by Hydrogen/Deuterium Exchange-Mass Spectrometry. Biochemistry 56(21): 2676-2689. DOI: 10.1021/acs.biochem.6b01220
Molecular processes in an electrochemical clozapine sensor.
Winkler TE, Lederer SL, Kim E, Ben-Yoav H, Kelly DL, Payne GF, Ghodssi R. 2017. Molecular processes in an electrochemical clozapine sensor. Biointerphases 12(2): 02B401. DOI: 10.1116/1.4982709
Application of 2D-NMR with room temperature NMR probes for the assessment of the higher order structure of filgrastim.
Brinson RG, Ghasriani H, Hodgson DJ, Adams KM, McEwen I, Freedberg DI, Chen K, Keire DA, Aubin Y, Marino JP. 2017. Application of 2D-NMR with room temperature NMR probes for the assessment of the higher order structure of filgrastim. Journal of pharmaceutical and biomedical analysis 141: 229-233. DOI: 10.1016/j.jpba.2017.03.063
NMRbox: A Resource for Biomolecular NMR Computation.
Maciejewski MW, Schuyler AD, Gryk MR, Moraru II, Romero PR, Ulrich EL, Eghbalnia HR, Livny M, Delaglio F, Hoch JC. 2017. NMRbox: A Resource for Biomolecular NMR Computation. Biophysical journal 112(8): 1529-1534. DOI: 10.1016/j.bpj.2017.03.011
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.
Carraro M, Minervini G, Giollo M, Bromberg Y, Capriotti E, Casadio R, Dunbrack R, Elefanti L, Fariselli P, Ferrari C, et al. 2017. Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI. Human mutation 38(9): 1042-1050. DOI: 10.1002/humu.23235
Water Proton NMR: A Tool for Protein Aggregation Characterization.
Taraban MB, DePaz RA, Lobo B, Yu YB. 2017. Water Proton NMR: A Tool for Protein Aggregation Characterization. Analytical chemistry 89(10): 5494-5502. DOI: 10.1021/acs.analchem.7b00464
Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antigens.
Chen G, Yang X, Ko A, Sun X, Gao M, Zhang Y, Shi A, Mariuzza RA, Weng NP. 2017. Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antigens. Cell reports 19(3): 569-583. DOI: 10.1016/j.celrep.2017.03.072
Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes.
Hoogerheide DP, Noskov SY, Jacobs D, Bergdoll L, Silin V, Worcester DL, Abramson J, Nanda H, Rostovtseva TK, Bezrukov SM. 2017. Structural features and lipid binding domain of tubulin on biomimetic mitochondrial membranes. Proceedings of the National Academy of Sciences of the United States of America 114(18): E3622-E3631. DOI: 10.1073/pnas.1619806114
The GAN Exonuclease or the Flap Endonuclease Fen1 and RNase HII Are Necessary for Viability of Thermococcus kodakarensis.
Burkhart BW, Cubonova L, Heider MR, Kelman Z, Reeve JN, Santangelo TJ. 2017. The GAN Exonuclease or the Flap Endonuclease Fen1 and RNase HII Are Necessary for Viability of Thermococcus kodakarensis. Journal of bacteriology 199(13): . DOI: 10.1128/JB.00141-17
Reliable clinical serum analysis with reusable electrochemical sensor: Toward point-of-care measurement of the antipsychotic medication clozapine.
Kang M, Kim E, Winkler TE, Banis G, Liu Y, Kitchen CA, Kelly DL, Ghodssi R, Payne GF. 2017. Reliable clinical serum analysis with reusable electrochemical sensor: Toward point-of-care measurement of the antipsychotic medication clozapine. Biosensors & bioelectronics 95: 55-59. DOI: 10.1016/j.bios.2017.04.008
The Activation of Protein Kinase A by the Calcium-Binding Protein S100A1 Is Independent of Cyclic AMP.
Melville Z, Hernández-Ochoa EO, Pratt SJP, Liu Y, Pierce AD, Wilder PT, Adipietro KA, Breysse DH, Varney KM, Schneider MF, et al. 2017. The Activation of Protein Kinase A by the Calcium-Binding Protein S100A1 Is Independent of Cyclic AMP. Biochemistry 56(17): 2328-2337. DOI: 10.1021/acs.biochem.7b00117
Investigating the ion dependence of the first unfolding step of GTPase-Associating Center ribosomal RNA.
Hayatshahi HS, Bergonzo C, Cheatham TE. 2018. Investigating the ion dependence of the first unfolding step of GTPase-Associating Center ribosomal RNA. Journal of biomolecular structure & dynamics 36(1): 243-253. DOI: 10.1080/07391102.2016.1274272
Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models.
Hwang IY, Koh E, Wong A, March JC, Bentley WE, Lee YS, Chang MW. 2017. Engineered probiotic Escherichia coli can eliminate and prevent Pseudomonas aeruginosa gut infection in animal models. Nature communications 8: 15028. DOI: 10.1038/ncomms15028
Lessons from the CAGI-4 Hopkins clinical panel challenge.
Chandonia JM, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, et al. 2017. Lessons from the CAGI-4 Hopkins clinical panel challenge. Human mutation 38(9): 1155-1168. DOI: 10.1002/humu.23225