Publications

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Exploring the DNA-recognition potential of homeodomains.
Chu SW, Noyes MB, Christensen RG, Pierce BG, Zhu LJ, Weng Z, Stormo GD, Wolfe SA. 2012. Exploring the DNA-recognition potential of homeodomains. Genome research 22(10): 1889-98. DOI: 10.1101/gr.139014.112
Effect of thiol pendant conjugates on plasmid DNA binding, release, and stability of polymeric delivery vectors.
Bacalocostantis I, Mane VP, Kang MS, Goodley AS, Muro S, Kofinas P. 2012. Effect of thiol pendant conjugates on plasmid DNA binding, release, and stability of polymeric delivery vectors. Biomacromolecules 13(5): 1331-9. DOI: 10.1021/bm3004786
Biofabrication of stratified biofilm mimics for observation and control of bacterial signaling.
Luo X, Wu HC, Tsao CY, Cheng Y, Betz J, Payne GF, Rubloff GW, Bentley WE. 2012. Biofabrication of stratified biofilm mimics for observation and control of bacterial signaling. Biomaterials 33(20): 5136-43. DOI: 10.1016/j.biomaterials.2012.03.037
DNA repair and replication fork helicases are differentially affected by alkyl phosphotriester lesion.
Suhasini AN, Sommers JA, Yu S, Wu Y, Xu T, Kelman Z, Kaplan DL, Brosh RM. 2012. DNA repair and replication fork helicases are differentially affected by alkyl phosphotriester lesion. The Journal of biological chemistry 287(23): 19188-98. DOI: 10.1074/jbc.M112.352757
Imino hydrogen positions in nucleic acids from density functional theory validated by NMR residual dipolar couplings.
Grishaev A, Ying J, Bax A. 2012. Imino hydrogen positions in nucleic acids from density functional theory validated by NMR residual dipolar couplings. Journal of the American Chemical Society 134(16): 6956-9. DOI: 10.1021/ja301775j
Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long-range effect.
West AL, Evans SE, González JM, Carter LG, Tsuruta H, Pozharski E, Michel SL. 2012. Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long-range effect. Proceedings of the National Academy of Sciences of the United States of America 109(15): 5633-8. DOI: 10.1073/pnas.1120283109
Interrogation of MDM2 phosphorylation in p53 activation using native chemical ligation: the functional role of Ser17 phosphorylation in MDM2 reexamined.
Zhan C, Varney K, Yuan W, Zhao L, Lu W. 2012. Interrogation of MDM2 phosphorylation in p53 activation using native chemical ligation: the functional role of Ser17 phosphorylation in MDM2 reexamined. Journal of the American Chemical Society 134(15): 6855-64. DOI: 10.1021/ja301255n
On the need for an international effort to capture, share and use crystallization screening data.
Newman J, Bolton EE, Müller-Dieckmann J, Fazio VJ, Gallagher DT, Lovell D, Luft JR, Peat TS, Ratcliffe D, Sayle RA, et al. 2012. On the need for an international effort to capture, share and use crystallization screening data. Acta crystallographica. Section F, Structural biology and crystallization communications 68(Pt 3): 253-8. DOI: 10.1107/S1744309112002618
Altering the communication networks of multispecies microbial systems using a diverse toolbox of AI-2 analogues.
Gamby S, Roy V, Guo M, Smith JA, Wang J, Stewart JE, Wang X, Bentley WE, Sintim HO. 2012. Altering the communication networks of multispecies microbial systems using a diverse toolbox of AI-2 analogues. ACS chemical biology 7(6): 1023-30. DOI: 10.1021/cb200524y
Crystal structure of a complete ternary complex of T-cell receptor, peptide-MHC, and CD4.
Yin Y, Wang XX, Mariuzza RA. 2012. Crystal structure of a complete ternary complex of T-cell receptor, peptide-MHC, and CD4. Proceedings of the National Academy of Sciences of the United States of America 109(14): 5405-10. DOI: 10.1073/pnas.1118801109
Formation of dAMP-glycerol and dAMP-Tris derivatives by Thermococcus kodakaraensis DNA primase.
Chemnitz Galal W, Pan M, Giulian G, Yuan W, Li S, Edwards JL, Marino JP, Kelman Z, Hurwitz J. 2012. Formation of dAMP-glycerol and dAMP-Tris derivatives by Thermococcus kodakaraensis DNA primase. The Journal of biological chemistry 287(20): 16220-9. DOI: 10.1074/jbc.M111.338160
Selection pressure on HIV-1 envelope by broadly neutralizing antibodies to the conserved CD4-binding site.
Wu X, Wang C, O'Dell S, Li Y, Keele BF, Yang Z, Imamichi H, Doria-Rose N, Hoxie JA, Connors M, et al. 2012. Selection pressure on HIV-1 envelope by broadly neutralizing antibodies to the conserved CD4-binding site. Journal of virology 86(10): 5844-56. DOI: 10.1128/JVI.07139-11
Electrodeposition of a biopolymeric hydrogel: potential for one-step protein electroaddressing.
Gray KM, Liba BD, Wang Y, Cheng Y, Rubloff GW, Bentley WE, Montembault A, Royaud I, David L, Payne GF. 2012. Electrodeposition of a biopolymeric hydrogel: potential for one-step protein electroaddressing. Biomacromolecules 13(4): 1181-9. DOI: 10.1021/bm3001155
Subsecond absolute quantitation of amine metabolites using isobaric tags for discovery of pathway activation in mammalian cells.
Yuan W, Anderson KW, Li S, Edwards JL. 2012. Subsecond absolute quantitation of amine metabolites using isobaric tags for discovery of pathway activation in mammalian cells. Analytical chemistry 84(6): 2892-9. DOI: 10.1021/ac203453t
NeXML: rich, extensible, and verifiable representation of comparative data and metadata.
Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, et al. 2012. NeXML: rich, extensible, and verifiable representation of comparative data and metadata. Systematic biology 61(4): 675-89. DOI: 10.1093/sysbio/sys025