Publications

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Characterization of the Bacteriophage-Derived Endolysins PlySs2 and PlySs9 with In Vitro Lytic Activity against Bovine Mastitis Streptococcus uberis.
Vander Elst N, Linden SB, Lavigne R, Meyer E, Briers Y, Nelson DC. 2020. Characterization of the Bacteriophage-Derived Endolysins PlySs2 and PlySs9 with In Vitro Lytic Activity against Bovine Mastitis <i>Streptococcus uberis</i>. Antibiotics (Basel, Switzerland) 9(9): . DOI: 10.3390/antibiotics9090621
Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7.
Greenfield J, Shang X, Luo H, Zhou Y, Linden SB, Heselpoth RD, Leiman PG, Nelson DC, Herzberg O. 2020. Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7. Scientific reports 10(1): 15402. DOI: 10.1038/s41598-020-72373-0
A Non-genetic Mechanism Involving the Integrin β4/Paxillin Axis Contributes to Chemoresistance in Lung Cancer.
Mohanty A, Nam A, Pozhitkov A, Yang L, Srivastava S, Nathan A, Wu X, Mambetsariev I, Nelson M, Subbalakshmi AR, et al. 2020. A Non-genetic Mechanism Involving the Integrin β4/Paxillin Axis Contributes to Chemoresistance in Lung Cancer. iScience 23(9): 101496. DOI: 10.1016/j.isci.2020.101496
Chemical shifts-based similarity restraints improve accuracy of RNA structures determined via NMR.
Lawrence C, Grishaev A. 2020. Chemical shifts-based similarity restraints improve accuracy of RNA structures determined via NMR. RNA (New York, N.Y.) 26(12): 2051-2061. DOI: 10.1261/rna.074617.119
General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM.
Wang F, Liu Y, Yu Z, Li S, Feng S, Cheng Y, Agard DA. 2020. General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proceedings of the National Academy of Sciences of the United States of America 117(39): 24269-24273. DOI: 10.1073/pnas.2009707117
CoV3D: a database of high resolution coronavirus protein structures.
Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. 2021. CoV3D: a database of high resolution coronavirus protein structures. Nucleic acids research 49(D1): D282-D287. DOI: 10.1093/nar/gkaa731
Monitoring of the sedimentation kinetics of vaccine adjuvants using water proton NMR relaxation.
Taraban MB, Yu YB. 2021. Monitoring of the sedimentation kinetics of vaccine adjuvants using water proton NMR relaxation. Magnetic resonance in chemistry : MRC 59(2): 147-161. DOI: 10.1002/mrc.5096
Structure-Based Design of Hepatitis C Virus E2 Glycoprotein Improves Serum Binding and Cross-Neutralization.
Pierce BG, Keck ZY, Wang R, Lau P, Garagusi K, Elkholy K, Toth EA, Urbanowicz RA, Guest JD, Agnihotri P, et al. 2020. Structure-Based Design of Hepatitis C Virus E2 Glycoprotein Improves Serum Binding and Cross-Neutralization. Journal of virology 94(22): . DOI: 10.1128/JVI.00704-20
Reducing the measurement time of exact NOEs by non-uniform sampling.
Nichols PJ, Born A, Henen MA, Strotz D, Jones DN, Delaglio F, Vögeli B. 2020. Reducing the measurement time of exact NOEs by non-uniform sampling. Journal of biomolecular NMR 74(12): 717-739. DOI: 10.1007/s10858-020-00344-8
Using All-Atom Potentials to Refine RNA Structure Predictions of SARS-CoV-2 Stem Loops.
Bergonzo C, Szakal AL. 2020. Using All-Atom Potentials to Refine RNA Structure Predictions of SARS-CoV-2 Stem Loops. International journal of molecular sciences 21(17): . DOI: 10.3390/ijms21176188
Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in E. coli.
Hauk P, Stephens K, Virgile C, VanArsdale E, Pottash AE, Schardt JS, Jay SM, Sintim HO, Bentley WE. 2020. Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in <i>E. coli</i>. ACS synthetic biology 9(10): 2692-2702. DOI: 10.1021/acssynbio.0c00179
CRISPR/Cas9-mediated mutagenesis of VvMLO3 results in enhanced resistance to powdery mildew in grapevine (Vitis vinifera).
Wan DY, Guo Y, Cheng Y, Hu Y, Xiao S, Wang Y, Wen YQ. 2020. CRISPR/Cas9-mediated mutagenesis of <i>VvMLO3</i> results in enhanced resistance to powdery mildew in grapevine (<i>Vitis vinifera</i>). Horticulture research 7: 116. DOI: 10.1038/s41438-020-0339-8
Construction of a Dual Protease Column, Subzero (-30 °C) Chromatography System and Multi-channel Precision Temperature Controller for Hydrogen-Deuterium Exchange Mass Spectrometry.
Hudgens JW. 2020. Construction of a Dual Protease Column, Subzero (-30 °C) Chromatography System and Multi-channel Precision Temperature Controller for Hydrogen-Deuterium Exchange Mass Spectrometry. Journal of research of the National Institute of Standards and Technology vol: . DOI: 10.6028/jres.125.025
Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives.
Padia J, Kulakova L, Galkin A, Herzberg O. 2020. Discovery and Preclinical Development of Antigiardiasis Fumagillol Derivatives. Antimicrobial agents and chemotherapy 64(10): . DOI: 10.1128/AAC.00582-20
RPW8.1 enhances the ethylene-signaling pathway to feedback-attenuate its mediated cell death and disease resistance in Arabidopsis.
Zhao ZX, Feng Q, Liu PQ, He XR, Zhao JH, Xu YJ, Zhang LL, Huang YY, Zhao JQ, Fan J, et al. 2021. RPW8.1 enhances the ethylene-signaling pathway to feedback-attenuate its mediated cell death and disease resistance in Arabidopsis. The New phytologist 229(1): 516-531. DOI: 10.1111/nph.16857