Publications

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Tracking B cell responses to the SARS-CoV-2 mRNA-1273 vaccine.
Lopes de Assis F, Hoehn KB, Zhang X, Kardava L, Smith CD, El Merhebi O, Buckner CM, Trihemasava K, Wang W, Seamon CA, et al. 2023. Tracking B cell responses to the SARS-CoV-2 mRNA-1273 vaccine. Cell reports 42(7): 112780. DOI: 10.1016/j.celrep.2023.112780
Targeted Nanocarriers Co-Opting Pulmonary Intravascular Leukocytes for Drug Delivery to the Injured Brain.
Nong J, Glassman PM, Myerson JW, Zuluaga-Ramirez V, Rodriguez-Garcia A, Mukalel A, Omo-Lamai S, Walsh LR, Zamora ME, Gong X, et al. 2023. Targeted Nanocarriers Co-Opting Pulmonary Intravascular Leukocytes for Drug Delivery to the Injured Brain. ACS nano : . DOI: 10.1021/acsnano.2c08275
Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies.
Metcalf MC, Janus BM, Yin R, Wang R, Guest JD, Pozharski E, Law M, Mariuzza RA, Toth EA, Pierce BG, et al. 2023. Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies. Nature communications 14(1): 3980. DOI: 10.1038/s41467-023-39659-z
More than just pattern recognition: Prediction of uncommon protein structure features by AI methods.
Herzberg O, Moult J. 2023. More than just pattern recognition: Prediction of uncommon protein structure features by AI methods. Proceedings of the National Academy of Sciences of the United States of America 120(28): e2221745120. DOI: 10.1073/pnas.2221745120
Salinization Dramatically Enhance the Anti-Prostate Cancer Efficacies of AR/AR-V7 and Mnk1/2 Molecular Glue Degraders, Galeterone and VNPP433-3β Which Outperform Docetaxel and Enzalutamide in CRPC CWR22Rv1 Xenograft Mouse Model.
Thankan RS, Thomas E, Purushottamachar P, Weber DJ, Njar VCO. 2023. Salinization Dramatically Enhance the Anti-Prostate Cancer Efficacies of AR/AR-V7 and Mnk1/2 Molecular Glue Degraders, Galeterone and VNPP433-3β Which Outperform Docetaxel and Enzalutamide in CRPC CWR22Rv1 Xenograft Mouse Model. Bioorganic chemistry 139: 106700. DOI: 10.1016/j.bioorg.2023.106700
Identification of a novel transport system in Borrelia burgdorferi that links the inner and outer membranes.
Bowen HG, Kenedy MR, Johnson DK, MacKerell AD, Akins DR. 2023. Identification of a novel transport system in Borrelia burgdorferi that links the inner and outer membranes. Pathogens and disease : . DOI: 10.1093/femspd/ftad014
Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis.
Yu H, Bai F, Ji C, Fan Z, Luo J, Ouyang B, Deng X, Xiao S, Bisseling T, Limpens E, et al. 2023. Plant lysin motif extracellular proteins are required for arbuscular mycorrhizal symbiosis. Proceedings of the National Academy of Sciences of the United States of America 120(27): e2301884120. DOI: 10.1073/pnas.2301884120
Glycosylation shapes the efficacy and safety of diverse protein, gene and cell therapies.
Rocamora F, Peralta AG, Shin S, Sorrentino J, Wu M, Toth EA, Fuerst TR, Lewis NE. 2023. Glycosylation shapes the efficacy and safety of diverse protein, gene and cell therapies. Biotechnology advances : 108206. DOI: 10.1016/j.biotechadv.2023.108206
Preventive Pharmacovigilance: timely and precise prevention of adverse events through person-level patient screening and dose-level product surveillance.
Yu YB, Briggs KT, Taraban MB. 2023. Preventive Pharmacovigilance: timely and precise prevention of adverse events through person-level patient screening and dose-level product surveillance. Pharmaceutical research : . DOI: 10.1007/s11095-023-03548-3
Effect of acid sphingomyelinase deficiency in type A Niemann-Pick disease on the transport of therapeutic nanocarriers across the blood-brain barrier.
Loeck M, Placci M, Muro S. 2023. Effect of acid sphingomyelinase deficiency in type A Niemann-Pick disease on the transport of therapeutic nanocarriers across the blood-brain barrier. Drug delivery and translational research : . DOI: 10.1007/s13346-023-01374-z
New prediction categories in CASP15.
Kryshtafovych A, Antczak M, Szachniuk M, Zok T, Kretsch RC, Rangan R, Pham P, Das R, Robin X, Studer G, et al. 2023. New prediction categories in CASP15. Proteins : . DOI: 10.1002/prot.26515
Influence of Mg2+ Distribution on the Stability of Folded States of the Twister Ribozyme Revealed Using Grand Canonical Monte Carlo and Generative Deep Learning Enhanced Sampling.
Sengul MY, MacKerell AD. 2023. Influence of Mg2+ Distribution on the Stability of Folded States of the Twister Ribozyme Revealed Using Grand Canonical Monte Carlo and Generative Deep Learning Enhanced Sampling. ACS omega 8(22): 19532-19546. DOI: 10.1021/acsomega.3c00931
Sedimentation behavior of quality and freeze-damaged aluminum-adjuvanted vaccines by wNMR.
Briggs KT, Taraban MB, Yu YB. 2023. Sedimentation behavior of quality and freeze-damaged aluminum-adjuvanted vaccines by <i>w</i>NMR. Human vaccines & immunotherapeutics 19(2): 2215152. DOI: 10.1080/21645515.2023.2215152
Fluorine-Functionalized Polyphosphazene Immunoadjuvant: Synthesis, Solution Behavior and In Vivo Potency.
Tagad HD, Marin A, Wang R, Yunus AS, Fuerst TR, Andrianov AK. 2023. Fluorine-Functionalized Polyphosphazene Immunoadjuvant: Synthesis, Solution Behavior and In Vivo Potency. Molecules (Basel, Switzerland) 28(10): . DOI: 10.3390/molecules28104218
Transglutaminase 2 binds to the CD44v6 cytoplasmic domain to stimulate CD44v6/ERK1/2 signaling and maintain an aggressive cancer phenotype.
Chen X, Adhikary G, Newland JJ, Xu W, Keillor JW, Weber DJ, Eckert RL. 2023. Transglutaminase 2 binds to the CD44v6 cytoplasmic domain to stimulate CD44v6/ERK1/2 signaling and maintain an aggressive cancer phenotype. Molecular cancer research : MCR : . DOI: 10.1158/1541-7786.MCR-23-0051