Publications

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Utilizing plant synthetic biology to accelerate plant-microbe interactions research.
Yang X, Tannous J, Rush TA, Del Valle I, Xiao S, Maharjan B, Liu Y, Weston DJ, De K, Tschaplinski TJ, et al. 2025. Utilizing plant synthetic biology to accelerate plant-microbe interactions research. Biodesign research 7(2): 100007. DOI: 10.1016/j.bidere.2025.100007
Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation.
Harding BD, DeZonia B, Garg R, Hu Z, Delaglio F, Grant T, Rienstra CM. 2025. Top-Down Scoring of Spectral Fitness by Image Analysis for Protein Structure Validation. Journal of chemical information and modeling : . DOI: 10.1021/acs.jcim.5c02159
Computational Modeling of PROTAC Ternary Complexes as Ensembles Using SILCS-xTAC.
Nordquist EB, Zhao M, Yu W, MacKerell AD. 2025. Computational Modeling of PROTAC Ternary Complexes as Ensembles Using SILCS-xTAC. Journal of chemical information and modeling : . DOI: 10.1021/acs.jcim.5c02045
Arrhythmia Risk Predictions from Molecular Simulations of Cardiac Ion Channel-Drug Interactions.
Rouen KC, Narang K, Han Y, Wang D, Jang E, Brunkow S, Yarov-Yarovoy V, MacKerell AD, Vorobyov I. 2025. Arrhythmia Risk Predictions from Molecular Simulations of Cardiac Ion Channel-Drug Interactions. Biophysical journal : . DOI: 10.1016/j.bpj.2025.12.015
Sleep health as a predictor of the course of depressed mood and loss of interest in individuals with depression.
Schmid SR, Schiel JE, Feige B, Holub F, Hertenstein E, Domschke K, Rutter MK, Spiegelhalder K. 2025. Sleep health as a predictor of the course of depressed mood and loss of interest in individuals with depression. International journal of clinical and health psychology : IJCHP 25(4): 100653. DOI: 10.1016/j.ijchp.2025.100653
Macromolecular dimensions of a synthetic polyelectrolyte as a factor in its interactions with protein and cells: desirability for longer chains.
Hlushko R, Marin A, Chowdhury A, Andrianov AK. 2025. Macromolecular dimensions of a synthetic polyelectrolyte as a factor in its interactions with protein and cells: desirability for longer chains. Journal of materials chemistry. B : . DOI: 10.1039/d5tb02163d
The use of multiple liquid chromatography methods augmented by phosphorus-31 nuclear magnetic resonance to characterize the diastereomer composition in synthetic oligonucleotides.
Ali M, Manghrani A, Szramowski M, Abdel-Megied AM, Liang L, Aberg NF, Yang K, Chen K, Wang Y, Zhang D, et al. 2025. The use of multiple liquid chromatography methods augmented by phosphorus-31 nuclear magnetic resonance to characterize the diastereomer composition in synthetic oligonucleotides. Journal of chromatography. A 1766: 466600. DOI: 10.1016/j.chroma.2025.466600
Structural insights into clonal restriction and diversity in T cell recognition of two immunodominant SARS-CoV-2 nucleocapsid epitopes.
Yuan P, Chen G, Li Y, Liu X, Saravanakumar S, Zhao J, Ji Q, Wang H, Lin YW, Elbahnasawy M, et al. 2025. Structural insights into clonal restriction and diversity in T cell recognition of two immunodominant SARS-CoV-2 nucleocapsid epitopes. Nature communications : . DOI: 10.1038/s41467-025-66322-6
Magnetodynamics of short nanoparticle chains.
Bui TQ, Oberdick SD, Abel FM, Donahue MJ, Quelhas KN, Dennis CL, Cleveland TE, Liu Y, Woods SI. 2025. Magnetodynamics of short nanoparticle chains. Scientific reports : . DOI: 10.1038/s41598-025-22864-9
ICAM-1 Targeting of Nanocarriers in a Human Blood-Brain-Barrier-on-a-Chip Complements In Vivo Brain Delivery Observations.
Vigo M, Palma-Florez S, Grimalt R, Placci M, Crespo A, Giannotti MI, Lagunas A, Mir M, Samitier J, Muro S. 2025. ICAM-1 Targeting of Nanocarriers in a Human Blood-Brain-Barrier-on-a-Chip Complements In Vivo Brain Delivery Observations. Journal of drug targeting : 1-21. DOI: 10.1080/1061186X.2025.2600101
Genetically-Programmed Hypervesiculation of Lactiplantibacillus Plantarum Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model.
Pirolli NH, Levy D, Schledwitz A, Moura NS, Sarkar M, Solomon TJ, Powsner EH, Nowak R, Mamczarz Z, Bridgeman CJ, et al. 2025. Genetically-Programmed Hypervesiculation of Lactiplantibacillus Plantarum Increases Production of Bacterial Extracellular Vesicles with Therapeutic Efficacy in a Preclinical Inflammatory Bowel Disease Model. Advanced science (Weinheim, Baden-Wurttemberg, Germany) : e12679. DOI: 10.1002/advs.202512679
The conserved bridging domain on HCV E1E2 glycoprotein complex is targeted by neutralizing antibodies from diverse lineages.
Chen F, Nguyen YTK, Lee YZ, Giang E, Lau SC, Koide Y, Hung SH, Ueno L, He L, Fuerst TR, et al. 2025. The conserved bridging domain on HCV E1E2 glycoprotein complex is targeted by neutralizing antibodies from diverse lineages. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.11.05.686883
Dynamic S-acylation of GSDMA regulates pyroptosis.
Tao Z, Thakare RP, Cheung M, Zhang J, Chen X, Hu X, Pierce BG, Wu X, Mao J. 2025. Dynamic <i>S</i>-acylation of GSDMA regulates pyroptosis. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.10.16.682910
An unconventional HxD motif orchestrates coatomer-dependent coronavirus morphogenesis.
Mohona S, Shakya AK, Singh S, Kearns FL, Jemison K, Erramilli S, Dey D, Qing E, Jennings BC, Doray B, et al. 2025. An unconventional HxD motif orchestrates coatomer-dependent coronavirus morphogenesis. bioRxiv : the preprint server for biology : . DOI: 10.1101/2025.10.16.682669
Scrambling Signal Modularity in Bottom-up Assembled Synthetic Pseudomonas Consortia Reveals Robust Information Transfer.
Chu M, VanArsdale E, Muthusamy D, Yung MC, Payne GF, Bentley WE. 2025. Scrambling Signal Modularity in Bottom-up Assembled Synthetic Pseudomonas Consortia Reveals Robust Information Transfer. ACS synthetic biology : . DOI: 10.1021/acssynbio.5c00486